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Lj3g3v3639480.1

Overview

Field	Value
Gene ID	Lj3g3v3639480
Transcript ID	Lj3g3v3639480.1
Lotus japonicus genome version	MG20 v3.0
Description	PREDICTED: WEB family protein At5g16730, chloroplastic-like [Cicer arietinum] gi\|502144133\|ref\|XP_004505588.1\|
Working Lj name	n.a.

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	1	83	83	–	–
PANTHER	PTHR23160 View details on PTHR23160 Search for proteins/transripts with this domain View external data on PTHR23160	1	816	816	6.30E-189	–
Pfam	PF05701 View details on PF05701 Search for proteins/transripts with this domain View external data on PF05701	80	367	288	4.60E-12	IPR008545 Show description in modal box View details on IPR008545 Search for proteins/transripts with this domain View on EBI InterPro Service
Coils	Coil View details on Coil Search for proteins/transripts with this domain	83	145	63	–	–
Coils	Coil View details on Coil Search for proteins/transripts with this domain	161	181	21	–	–
Coils	Coil View details on Coil Search for proteins/transripts with this domain	252	303	52	–	–
Coils	Coil View details on Coil Search for proteins/transripts with this domain	311	331	21	–	–
Coils	Coil View details on Coil Search for proteins/transripts with this domain	339	373	35	–	–
Coils	Coil View details on Coil Search for proteins/transripts with this domain	381	422	42	–	–
Coils	Coil View details on Coil Search for proteins/transripts with this domain	427	506	80	–	–
Coils	Coil View details on Coil Search for proteins/transripts with this domain	550	633	84	–	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	657	676	20	–	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	764	812	49	–	–

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

Unable to find any GO terms for the transcript with the identifier.

Genome browser

LORE1 insertions 12

Expression data

Expression pattern

Expression pattern of Lj3g3v3639480.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj3g3v3639480.1, powered by CORGI.

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