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Lj4g3v0575400.1

Overview

Field Value
Gene ID Lj4g3v0575400
Transcript ID Lj4g3v0575400.1
Related isoforms 1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: polyadenylate-binding protein RBP47-like [Cicer arietinum] gi|502143047|ref|XP_004505196.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 30 30 – –
MobiDBLite
mobidb-lite
70 112 43 – –
Gene3D
G3DSA:3.30.70.330
83 192 110 8.10E-23
IPR012677
SUPERFAMILY
SSF54928
84 194 111 7.52E-23
IPR012677
ProSiteProfiles
PS50102
114 194 81 15.187
IPR000504
SMART
SM00360
115 190 76 3.50E-15
IPR000504
CDD
cd12344
115 195 81 1.34E-45 –
Pfam
PF00076
116 183 68 3.10E-13
IPR000504
PANTHER
PTHR24012:SF403
184 293 110 1.80E-85 –
PANTHER
PTHR24012
184 293 110 1.80E-85 –
Gene3D
G3DSA:3.30.70.330
200 292 93 9.00E-23
IPR012677
SUPERFAMILY
SSF54928
205 312 108 1.49E-24
IPR012677
CDD
cd12345
207 286 80 3.96E-46 –
ProSiteProfiles
PS50102
208 287 80 17.216
IPR000504
SMART
SM00360
209 283 75 9.70E-20
IPR000504
Pfam
PF00076
210 280 71 1.20E-15
IPR000504
PANTHER
PTHR24012:SF403
319 330 12 1.80E-85 –
PANTHER
PTHR24012
319 330 12 1.80E-85 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003676
Molecular function Nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
Subterm of

Genome browser

LORE1 insertions 22

Expression data

Expression pattern

Expression pattern of Lj4g3v0575400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj4g3v0575400.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.