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Lj4g3v0575400.2

Overview

Field Value
Gene ID Lj4g3v0575400
Transcript ID Lj4g3v0575400.2
Related isoforms 1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: polyadenylate-binding protein RBP47-like [Cicer arietinum] gi|502143047|ref|XP_004505196.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
ProSiteProfiles
PS50102
1 70 70 13.396
IPR000504
CDD
cd12344
1 71 71 5.15E-39 –
SMART
SM00360
1 66 66 0.008
IPR000504
SUPERFAMILY
SSF54928
1 57 57 3.94E-16
IPR012677
Gene3D
G3DSA:3.30.70.330
2 69 68 1.20E-15
IPR012677
Pfam
PF00076
3 59 57 1.50E-11
IPR000504
PANTHER
PTHR24012:SF403
60 169 110 4.30E-159 –
PANTHER
PTHR24012
60 169 110 4.30E-159 –
Gene3D
G3DSA:3.30.70.330
76 168 93 7.40E-23
IPR012677
SUPERFAMILY
SSF54928
81 188 108 1.10E-24
IPR012677
CDD
cd12345
83 162 80 2.77E-45 –
ProSiteProfiles
PS50102
84 163 80 17.216
IPR000504
SMART
SM00360
85 159 75 9.70E-20
IPR000504
Pfam
PF00076
86 156 71 9.50E-16
IPR000504
Gene3D
G3DSA:3.30.70.330
186 288 103 1.30E-24
IPR012677
SUPERFAMILY
SSF54928
195 304 110 6.58E-30
IPR012677
PANTHER
PTHR24012
195 320 126 4.30E-159 –
PANTHER
PTHR24012:SF403
195 320 126 4.30E-159 –
CDD
cd12346
203 274 72 4.68E-36 –
ProSiteProfiles
PS50102
204 276 73 18.035
IPR000504
SMART
SM00360
205 272 68 8.70E-21
IPR000504
Pfam
PF00076
206 270 65 1.70E-17
IPR000504
MobiDBLite
mobidb-lite
274 321 48 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003676
Molecular function Nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
Subterm of

Genome browser

LORE1 insertions 22

Expression data

Expression pattern

Expression pattern of Lj4g3v0575400.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj4g3v0575400.2, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.