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Lj4g3v1659950.2

Overview

Field Value
Gene ID Lj4g3v1659950
Transcript ID Lj4g3v1659950.2
Related isoforms 1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: formin-like protein 20-like [Glycine max] gi|356513519|ref|XP_003525461.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR23213
1 39 39 1.00E-132 –
PANTHER
PTHR23213:SF210
1 39 39 1.00E-132 –
SMART
SM01326
41 181 141 6.00E-44
IPR014020
Pfam
PF10409
42 179 138 8.30E-30
IPR014020
SUPERFAMILY
SSF49562
42 179 138 3.60E-23
IPR000008
ProSiteProfiles
PS51182
43 182 140 29.067
IPR014020
Gene3D
G3DSA:2.60.40.1110
43 180 138 3.60E-17 –
PANTHER
PTHR23213
97 315 219 1.00E-132 –
PANTHER
PTHR23213:SF210
97 315 219 1.00E-132 –
Coils
Coil
349 369 21 – –
MobiDBLite
mobidb-lite
375 400 26 – –
PANTHER
PTHR23213:SF210
391 416 26 1.00E-132 –
PANTHER
PTHR23213
391 416 26 1.00E-132 –
PANTHER
PTHR23213
446 605 160 1.00E-132 –
PANTHER
PTHR23213:SF210
446 605 160 1.00E-132 –
MobiDBLite
mobidb-lite
508 839 332 – –
PRINTS
PR01217
540 552 13 5.30E-09 –
PRINTS
PR01217
593 614 22 5.30E-09 –
PRINTS
PR01217
618 634 17 5.30E-09 –
PANTHER
PTHR23213
629 641 13 1.00E-132 –
PANTHER
PTHR23213:SF210
629 641 13 1.00E-132 –
PRINTS
PR01217
667 692 26 5.30E-09 –
PANTHER
PTHR23213:SF210
667 719 53 1.00E-132 –
PANTHER
PTHR23213
667 719 53 1.00E-132 –
PANTHER
PTHR23213
740 745 6 1.00E-132 –
PANTHER
PTHR23213:SF210
740 745 6 1.00E-132 –
PANTHER
PTHR23213:SF210
761 824 64 1.00E-132 –
PANTHER
PTHR23213
761 824 64 1.00E-132 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

Genome browser

LORE1 insertions 101

Expression data

Expression pattern

Expression pattern of Lj4g3v1659950.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj4g3v1659950.2, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.