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Lj4g3v1935530.1

Overview

Field	Value
Gene ID	Lj4g3v1935530
Transcript ID	Lj4g3v1935530.1
Lotus japonicus genome version	MG20 v3.0
Description	PREDICTED: monogalactosyldiacylglycerol synthase 2, chloroplastic-like [Glycine max] gi\|356546136\|ref\|XP_003541487.1\|
Working Lj name	n.a.

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
PANTHER	PTHR21015 View details on PTHR21015 Search for proteins/transripts with this domain View external data on PTHR21015	26	401	376	2.70E-301	–
PANTHER	PTHR21015:SF25 View details on PTHR21015:SF25 Search for proteins/transripts with this domain View external data on PTHR21015:SF25	26	401	376	2.70E-301	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	29	51	23	–	–
Pfam	PF06925 View details on PF06925 Search for proteins/transripts with this domain View external data on PF06925	77	245	169	9.20E-62	IPR009695 Show description in modal box View details on IPR009695 Search for proteins/transripts with this domain View on EBI InterPro Service
SUPERFAMILY	SSF53756 View details on SSF53756 Search for proteins/transripts with this domain View external data on SSF53756	121	393	273	5.18E-21	–
Gene3D	G3DSA:3.40.50.2000 View details on G3DSA:3.40.50.2000 Search for proteins/transripts with this domain View external data on G3DSA:3.40.50.2000	237	395	159	3.10E-24	–
Pfam	PF04101 View details on PF04101 Search for proteins/transripts with this domain View external data on PF04101	297	390	94	8.10E-08	IPR007235 Show description in modal box View details on IPR007235 Search for proteins/transripts with this domain View on EBI InterPro Service

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0009247 View details of GO:0009247 AmiGO InterPro QuickGO	Biological process	Glycolipid biosynthetic process	The chemical reactions and pathways resulting in the formation of glycolipid, a class of 1,2-di-O-acylglycerols joined at oxygen 3 by a glycosidic linkage to a carbohydrate part (usually a mono-, di- or tri-saccharide).	Subterm of View details of GO:0006664 View details of GO:0046467 View details of GO:1901137
GO:0016758 View details of GO:0016758 AmiGO InterPro QuickGO	Molecular function	Transferase activity, transferring hexosyl groups	Catalysis of the transfer of a hexosyl group from one compound (donor) to another (acceptor).	Subterm of View details of GO:0016757

Genome browser

LORE1 insertions 15

Expression data

Expression pattern

Expression pattern of Lj4g3v1935530.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj4g3v1935530.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.