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Lj4g3v2046140.1

Overview

Field Value
Gene ID Lj4g3v2046140
Transcript ID Lj4g3v2046140.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: zinc finger protein CONSTANS-LIKE 5-like isoform X1 [Cicer arietinum] gi|502150148|ref|XP_004507812.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR31319
2 369 368 2.10E-205 –
PANTHER
PTHR31319:SF14
2 369 368 2.10E-205 –
ProSiteProfiles
PS50119
12 59 48 10.054
IPR000315
SMART
SM00336
12 59 48 1.40E-11
IPR000315
Pfam
PF00643
14 56 43 1.70E-06
IPR000315
CDD
cd00021
16 59 44 3.01E-06 –
ProSiteProfiles
PS50119
55 102 48 11.007
IPR000315
Pfam
PF00643
57 102 46 2.90E-07
IPR000315
CDD
cd00021
58 102 45 8.52E-09 –
SMART
SM00336
60 102 43 1.70E-10
IPR000315
ProSiteProfiles
PS51017
297 339 43 16.787
IPR010402
Pfam
PF06203
297 339 43 5.60E-18
IPR010402

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005515
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Subterm of
GO:0008270
Molecular function Zinc ion binding Interacting selectively and non-covalently with zinc (Zn) ions.
Subterm of

Genome browser

LORE1 insertions 6

Expression data

Expression pattern

Expression pattern of Lj4g3v2046140.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj4g3v2046140.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.