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Lj4g3v2717080.1

Overview

Field Value
Gene ID Lj4g3v2717080
Transcript ID Lj4g3v2717080.1
Lotus japonicus genome version MG20 v3.0
Description terminal ear1-like 2 protein [Populus tremula x Populus alba] gi|148927338|gb|ABR19818.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite 1 28 28
Gene3D 102 147 46 9.50E-04
PANTHER 167 267 101 3.80E-112
PANTHER 167 267 101 3.80E-112
ProSiteProfiles 189 262 74 15.153
SMART 190 258 69 3.50E-17
Gene3D 190 264 75 7.30E-20
SUPERFAMILY 190 272 83 1.22E-23
Pfam 191 255 65 4.30E-15
MobiDBLite 332 379 48
SUPERFAMILY 401 481 81 1.22E-23
PANTHER 401 501 101 3.80E-112
PANTHER 401 501 101 3.80E-112
Gene3D 401 484 84 1.50E-05
Pfam 403 511 109 7.50E-35
CDD 403 502 100 9.73E-62
PANTHER 520 533 14 3.80E-112
PANTHER 520 533 14 3.80E-112
MobiDBLite 534 557 24
MobiDBLite 569 588 20

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
Molecular function Nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.

Expression data

Expression pattern

Expression pattern of Lj4g3v2717080.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj4g3v2717080.1, powered by CORGI.

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