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Lj5g3v0035410.1

Overview

Field Value
Gene ID Lj5g3v0035410
Transcript ID Lj5g3v0035410.1
Related isoforms 1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: RNA-binding post-transcriptional regulator csx1-like [Glycine max] gi|356562301|ref|XP_003549410.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 22 22 – –
SUPERFAMILY
SSF54928
50 165 116 7.19E-23
IPR012677
MobiDBLite
mobidb-lite
58 77 20 – –
Gene3D
G3DSA:3.30.70.330
67 164 98 1.20E-21
IPR012677
ProSiteProfiles
PS50102
85 165 81 14.658
IPR000504
SMART
SM00360
86 161 76 8.60E-14
IPR000504
CDD
cd12344
86 166 81 4.42E-46 –
Pfam
PF00076
87 151 65 7.70E-13
IPR000504
PANTHER
PTHR24012:SF403
155 285 131 1.20E-72 –
PANTHER
PTHR24012
155 285 131 1.20E-72 –
Gene3D
G3DSA:3.30.70.330
171 272 102 7.20E-22
IPR012677
SUPERFAMILY
SSF54928
172 275 104 3.36E-22
IPR012677
CDD
cd12345
177 256 80 7.09E-47 –
ProSiteProfiles
PS50102
178 257 80 16.364
IPR000504
SMART
SM00360
179 253 75 6.80E-17
IPR000504
Pfam
PF00076
180 249 70 1.40E-14
IPR000504
MobiDBLite
mobidb-lite
254 280 27 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003676
Molecular function Nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
Subterm of

Genome browser

LORE1 insertions 23

Expression data

Expression pattern

Expression pattern of Lj5g3v0035410.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj5g3v0035410.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.