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Lj5g3v0612080.1

Overview

Field	Value
Gene ID	Lj5g3v0612080
Transcript ID	Lj5g3v0612080.1
Lotus japonicus genome version	MG20 v3.0
Description	PREDICTED: serine-rich adhesin for platelets-like isoform X1 [Cicer arietinum] gi\|502114673\|ref\|XP_004495016.1\|
Working Lj name	n.a.

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
PANTHER	PTHR34418 View details on PTHR34418 Search for proteins/transripts with this domain View external data on PTHR34418	1	527	527	0	–
PANTHER	PTHR34418:SF1 View details on PTHR34418:SF1 Search for proteins/transripts with this domain View external data on PTHR34418:SF1	1	527	527	0	–
SUPERFAMILY	SSF117289 View details on SSF117289 Search for proteins/transripts with this domain View external data on SSF117289	15	227	213	2.01E-10	–
SUPERFAMILY	SSF117289 View details on SSF117289 Search for proteins/transripts with this domain View external data on SSF117289	317	418	102	2.01E-10	–
Coils	Coil View details on Coil Search for proteins/transripts with this domain	454	474	21	–	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	502	522	21	–	–
PANTHER	PTHR34418 View details on PTHR34418 Search for proteins/transripts with this domain View external data on PTHR34418	594	1728	1135	0	–
PANTHER	PTHR34418:SF1 View details on PTHR34418:SF1 Search for proteins/transripts with this domain View external data on PTHR34418:SF1	594	1728	1135	0	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	641	693	53	–	–
Coils	Coil View details on Coil Search for proteins/transripts with this domain	812	850	39	–	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	1068	1090	23	–	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	1183	1212	30	–	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	1231	1278	48	–	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	1312	1394	83	–	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	1508	1532	25	–	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	1708	1728	21	–	–
Coils	Coil View details on Coil Search for proteins/transripts with this domain	1726	1728	3	–	–

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

Unable to find any GO terms for the transcript with the identifier.

Genome browser

LORE1 insertions 88

Expression data

Expression pattern

Expression pattern of Lj5g3v0612080.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj5g3v0612080.1, powered by CORGI.

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