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Lj5g3v0841030.1

Overview

Field Value
Gene ID Lj5g3v0841030
Transcript ID Lj5g3v0841030.1
Related isoforms 2
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: 33 kDa ribonucleoprotein, chloroplastic-like [Cicer arietinum] gi|502122232|ref|XP_004497644.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
65 88 24 – –
PANTHER
PTHR24012
67 167 101 3.30E-49 –
Gene3D
G3DSA:3.30.70.330
71 175 105 1.10E-28
IPR012677
SUPERFAMILY
SSF54928
89 269 181 1.43E-47
IPR012677
ProSiteProfiles
PS50102
91 169 79 19.741
IPR000504
CDD
cd12399
92 168 77 4.70E-32 –
SMART
SM00360
92 165 74 1.10E-26
IPR000504
Pfam
PF00076
93 163 71 1.90E-22
IPR000504
Gene3D
G3DSA:3.30.70.330
178 270 93 5.70E-22
IPR012677
PANTHER
PTHR24012
189 266 78 3.30E-49 –
ProSiteProfiles
PS50102
190 268 79 16.909
IPR000504
SMART
SM00360
191 264 74 5.20E-21
IPR000504
Pfam
PF00076
192 262 71 5.60E-16
IPR000504

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003676
Molecular function Nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
Subterm of

Genome browser

LORE1 insertions 42

Expression data

Expression pattern

Expression pattern of Lj5g3v0841030.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj5g3v0841030.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.