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Lj5g3v0921310.1

Overview

Field Value
Gene ID Lj5g3v0921310
Transcript ID Lj5g3v0921310.1
Lotus japonicus genome version MG20 v3.0
Description actin 4 [Mangifera indica] gi|346683575|gb|AEO45960.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR11937:SF255
1 377 377 0 –
PANTHER
PTHR11937
1 377 377 0
IPR004000
Gene3D
G3DSA:3.30.420.40
5 188 184 8.60E-77 –
Pfam
PF00022
5 377 373 1.20E-146
IPR004000
SUPERFAMILY
SSF53067
6 155 150 8.42E-66 –
SMART
SM00268
7 377 371 3.10E-232
IPR004000
CDD
cd00012
10 183 174 1.74E-17 –
PRINTS
PR00190
28 37 10 1.30E-55
IPR004000
PRINTS
PR00190
51 62 12 1.30E-55
IPR004000
ProSitePatterns
PS00406
55 65 11 –
IPR004001
PRINTS
PR00190
63 85 23 1.30E-55
IPR004000
ProSitePatterns
PS01132
106 118 13 –
IPR020902
PRINTS
PR00190
117 130 14 1.30E-55
IPR004000
PRINTS
PR00190
142 161 20 1.30E-55
IPR004000
SUPERFAMILY
SSF53067
149 377 229 5.75E-96 –
Gene3D
G3DSA:3.90.640.10
189 258 70 2.00E-39 –
PRINTS
PR00190
238 254 17 1.30E-55
IPR004000
Gene3D
G3DSA:3.30.420.40
259 375 117 1.50E-39 –
ProSitePatterns
PS00432
358 366 9 –
IPR004001

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

Genome browser

LORE1 insertions 20

Expression data

Expression pattern

Expression pattern of Lj5g3v0921310.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj5g3v0921310.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.