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Lj5g3v1118330.1

Overview

Field Value
Gene ID Lj5g3v1118330
Transcript ID Lj5g3v1118330.1
Related isoforms 1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: TBC1 domain family member 15-like [Glycine max] gi|356536848|ref|XP_003536945.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR22957
19 122 104 7.40E-231 –
PANTHER
PTHR22957:SF299
19 122 104 7.40E-231 –
SUPERFAMILY
SSF47923
51 114 64 1.70E-49
IPR000195
Gene3D
G3DSA:1.10.8.270
67 106 40 2.40E-29 –
SMART
SM00164
72 336 265 8.80E-33
IPR000195
ProSiteProfiles
PS50086
75 313 239 35.306
IPR000195
SUPERFAMILY
SSF47923
151 273 123 1.70E-49
IPR000195
Pfam
PF00566
151 311 161 4.60E-35
IPR000195
Gene3D
G3DSA:1.10.8.270
162 236 75 2.40E-29 –
PANTHER
PTHR22957:SF299
166 318 153 7.40E-231 –
PANTHER
PTHR22957
166 318 153 7.40E-231 –
SUPERFAMILY
SSF47923
251 417 167 1.07E-28
IPR000195
PANTHER
PTHR22957
366 423 58 7.40E-231 –
PANTHER
PTHR22957:SF299
366 423 58 7.40E-231 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

Genome browser

LORE1 insertions 44

Expression data

Expression pattern

Expression pattern of Lj5g3v1118330.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj5g3v1118330.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.