Transcript — View — Lotus Base

Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

Lj5g3v1176970.1

Overview

Field	Value
Gene ID	Lj5g3v1176970
Transcript ID	Lj5g3v1176970.1
Lotus japonicus genome version	MG20 v3.0
Description	COP1-interacting protein [Medicago truncatula] gi\|357441119\|ref\|XP_003590837.1\|
Working Lj name	n.a.

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
PANTHER	PTHR31008 View details on PTHR31008 Search for proteins/transripts with this domain View external data on PTHR31008	2	544	543	0	–
PANTHER	PTHR31008:SF0 View details on PTHR31008:SF0 Search for proteins/transripts with this domain View external data on PTHR31008:SF0	2	544	543	0	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	368	472	105	–	–
PANTHER	PTHR31008 View details on PTHR31008 Search for proteins/transripts with this domain View external data on PTHR31008	596	621	26	0	–
PANTHER	PTHR31008:SF0 View details on PTHR31008:SF0 Search for proteins/transripts with this domain View external data on PTHR31008:SF0	596	621	26	0	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	606	626	21	–	–
PANTHER	PTHR31008 View details on PTHR31008 Search for proteins/transripts with this domain View external data on PTHR31008	681	1297	617	0	–
PANTHER	PTHR31008:SF0 View details on PTHR31008:SF0 Search for proteins/transripts with this domain View external data on PTHR31008:SF0	681	1297	617	0	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	726	787	62	–	–
Coils	Coil View details on Coil Search for proteins/transripts with this domain	778	820	43	–	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	818	960	143	–	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	1218	1237	20	–	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	1248	1278	31	–	–

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

Unable to find any GO terms for the transcript with the identifier.

Genome browser

Expression data

Expression pattern

Expression pattern of Lj5g3v1176970.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj5g3v1176970.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.