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Field | Value |
---|---|
Gene ID | Lj5g3v1177040 |
Transcript ID | Lj5g3v1177040.1 |
Lotus japonicus genome version | MG20 v3.0 |
Description | PREDICTED: agamous-like MADS-box protein AGL61-like [Glycine max] gi|356511379|ref|XP_003524404.1| |
Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
SUPERFAMILY | 1 | 71 | 71 | 1.83E-27 | ||
SMART | 1 | 60 | 60 | 1.70E-34 | ||
ProSiteProfiles | 1 | 61 | 61 | 26.604 | ||
PANTHER | 2 | 160 | 159 | 1.20E-51 | – | |
CDD | 2 | 75 | 74 | 1.55E-31 | ||
PANTHER | 2 | 160 | 159 | 1.20E-51 | – | |
PRINTS | 3 | 23 | 21 | 2.60E-20 | ||
Pfam | 12 | 57 | 46 | 3.40E-25 | ||
PRINTS | 23 | 38 | 16 | 2.60E-20 | ||
PRINTS | 38 | 59 | 22 | 2.60E-20 | ||
MobiDBLite | 72 | 94 | 23 | – | – | |
Coils | 105 | 132 | 28 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | RNA polymerase II regulatory region sequence-specific DNA binding | Interacting selectively and non-covalently with a specific sequence of DNA that is part of a regulatory region that controls the transcription of a gene or cistron by RNA polymerase II. | ||
Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
Biological process | Positive regulation of transcription by RNA polymerase II | Any process that activates or increases the frequency, rate or extent of transcription from an RNA polymerase II promoter. | ||
Molecular function | Protein dimerization activity | The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits. |
Expression pattern of Lj5g3v1177040.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj5g3v1177040.1, powered by CORGI.
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