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Lj5g3v1497870.1

Overview

Field	Value
Gene ID	Lj5g3v1497870
Transcript ID	Lj5g3v1497870.1
Lotus japonicus genome version	MG20 v3.0
Description	PREDICTED: chromatin modification-related protein MEAF6-like [Cicer arietinum] gi\|502115003\|ref\|XP_004495102.1\|
Working Lj name	n.a.

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
PANTHER	PTHR13476 View details on PTHR13476 Search for proteins/transripts with this domain View external data on PTHR13476	1	154	154	6.60E-112	–
PANTHER	PTHR13476:SF2 View details on PTHR13476:SF2 Search for proteins/transripts with this domain View external data on PTHR13476:SF2	1	154	154	6.60E-112	–
Coils	Coil View details on Coil Search for proteins/transripts with this domain	16	36	21	–	–
Pfam	PF09340 View details on PF09340 Search for proteins/transripts with this domain View external data on PF09340	16	92	77	1.10E-25	IPR015418 Show description in modal box View details on IPR015418 Search for proteins/transripts with this domain View on EBI InterPro Service
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	87	156	70	–	–

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0000123 View details of GO:0000123 AmiGO InterPro QuickGO	Cellular component	Histone acetyltransferase complex	A protein complex that possesses histone acetyltransferase activity.	Subterm of View details of GO:0031248 View details of GO:0044451
GO:0016573 View details of GO:0016573 AmiGO InterPro QuickGO	Biological process	Histone acetylation	The modification of a histone by the addition of an acetyl group.	Subterm of View details of GO:0016570 View details of GO:0018393

Genome browser

LORE1 insertions 7

Expression data

Expression pattern

Expression pattern of Lj5g3v1497870.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj5g3v1497870.1, powered by CORGI.

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