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Lj5g3v2027210.1

Overview

Field	Value
Gene ID	Lj5g3v2027210
Transcript ID	Lj5g3v2027210.1
Lotus japonicus genome version	MG20 v3.0
Description	SEUSS-like 2 [Theobroma cacao] gi\|508775845\|gb\|EOY23101.1\|
Working Lj name	n.a.

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
PANTHER	PTHR10378 View details on PTHR10378 Search for proteins/transripts with this domain View external data on PTHR10378	1	168	168	0	IPR029005 Show description in modal box View details on IPR029005 Search for proteins/transripts with this domain View on EBI InterPro Service
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	1	54	54	–	–
PANTHER	PTHR10378:SF9 View details on PTHR10378:SF9 Search for proteins/transripts with this domain View external data on PTHR10378:SF9	1	168	168	0	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	128	189	62	–	–
PANTHER	PTHR10378:SF9 View details on PTHR10378:SF9 Search for proteins/transripts with this domain View external data on PTHR10378:SF9	184	270	87	0	–
PANTHER	PTHR10378 View details on PTHR10378 Search for proteins/transripts with this domain View external data on PTHR10378	184	270	87	0	IPR029005 Show description in modal box View details on IPR029005 Search for proteins/transripts with this domain View on EBI InterPro Service
Coils	Coil View details on Coil Search for proteins/transripts with this domain	252	290	39	–	–
PANTHER	PTHR10378 View details on PTHR10378 Search for proteins/transripts with this domain View external data on PTHR10378	290	868	579	0	IPR029005 Show description in modal box View details on IPR029005 Search for proteins/transripts with this domain View on EBI InterPro Service
PANTHER	PTHR10378:SF9 View details on PTHR10378:SF9 Search for proteins/transripts with this domain View external data on PTHR10378:SF9	290	868	579	0	–
Pfam	PF01803 View details on PF01803 Search for proteins/transripts with this domain View external data on PF01803	310	569	260	1.60E-55	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	654	719	66	–	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	758	842	85	–	–

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

Unable to find any GO terms for the transcript with the identifier.

Genome browser

LORE1 insertions 24

Expression data

Expression pattern

Expression pattern of Lj5g3v2027210.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj5g3v2027210.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.