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Lj5g3v2059610.1

Overview

Field Value
Gene ID Lj5g3v2059610
Transcript ID Lj5g3v2059610.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: agamous-like MADS-box protein AGL62-like [Cicer arietinum] gi|502119960|ref|XP_004496799.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
ProSiteProfiles
PS50066
12 72 61 23.661
IPR002100
SMART
SM00432
12 71 60 5.80E-26
IPR002100
SUPERFAMILY
SSF55455
13 90 78 3.01E-24
IPR002100
PANTHER
PTHR11945:SF185
13 219 207 3.10E-67 –
PANTHER
PTHR11945
13 219 207 3.10E-67 –
CDD
cd00265
13 81 69 1.94E-33
IPR033896
PRINTS
PR00404
14 34 21 7.40E-18
IPR002100
Pfam
PF00319
21 68 48 4.90E-20
IPR002100
PRINTS
PR00404
34 49 16 7.40E-18
IPR002100
PRINTS
PR00404
49 70 22 7.40E-18
IPR002100

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0000977
Molecular function RNA polymerase II regulatory region sequence-specific DNA binding Interacting selectively and non-covalently with a specific sequence of DNA that is part of a regulatory region that controls the transcription of a gene or cistron by RNA polymerase II.
Subterm of
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of
GO:0045944
Biological process Positive regulation of transcription by RNA polymerase II Any process that activates or increases the frequency, rate or extent of transcription from an RNA polymerase II promoter.
Subterm of
Positively regulates
GO:0046983
Molecular function Protein dimerization activity The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits.
Subterm of

Genome browser

LORE1 insertions

No LORE1 insertions have been found in the genomic region that overlaps with this gene.

Expression data

Expression pattern

Expression pattern of Lj5g3v2059610.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj5g3v2059610.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.