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Lj5g3v2078240.1

Overview

Field Value
Gene ID Lj5g3v2078240
Transcript ID Lj5g3v2078240.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: cyclin-D4-1-like [Glycine max] gi|356574327|ref|XP_003555300.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 28 28 – –
PANTHER
PTHR10177
15 24 10 2.20E-157 –
PANTHER
PTHR10177:SF224
15 24 10 2.20E-157 –
PANTHER
PTHR10177:SF224
41 338 298 2.20E-157 –
PANTHER
PTHR10177
41 338 298 2.20E-157 –
SUPERFAMILY
SSF47954
45 186 142 2.08E-33
IPR013763
Pfam
PF00134
56 186 131 7.70E-27
IPR006671
Gene3D
G3DSA:1.10.472.10
71 180 110 1.10E-26
IPR013763
ProSitePatterns
PS00292
86 117 32 –
IPR006671
CDD
cd00043
86 175 90 6.94E-13 –
SMART
SM00385
91 180 90 1.40E-11
IPR013763
Gene3D
G3DSA:1.10.472.10
181 288 108 3.10E-07
IPR013763
SMART
SM01332
189 319 131 8.80E-13
IPR004367
Pfam
PF02984
189 285 97 4.10E-09
IPR004367
MobiDBLite
mobidb-lite
323 364 42 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0042025
Cellular component Host cell nucleus A membrane-bounded organelle as it is found in the host cell in which chromosomes are housed and replicated. The host is defined as the larger of the organisms involved in a symbiotic interaction.
Subterm of

Genome browser

LORE1 insertions 2

Expression data

Expression pattern

Expression pattern of Lj5g3v2078240.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj5g3v2078240.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.