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Lj5g3v2179650.1

Overview

Field	Value
Gene ID	Lj5g3v2179650
Transcript ID	Lj5g3v2179650.1
Lotus japonicus genome version	MG20 v3.0
Description	CONSTANS-like zinc finger protein [Medicago truncatula] gi\|358348813\|ref\|XP_003638437.1\|
Working Lj name	n.a.

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
PANTHER	PTHR31717 View details on PTHR31717 Search for proteins/transripts with this domain View external data on PTHR31717	1	121	121	7.60E-172	–
PANTHER	PTHR31717:SF14 View details on PTHR31717:SF14 Search for proteins/transripts with this domain View external data on PTHR31717:SF14	1	121	121	7.60E-172	–
SMART	SM00336 View details on SM00336 Search for proteins/transripts with this domain View external data on SM00336	1	47	47	0.0017	IPR000315 Show description in modal box View details on IPR000315 Search for proteins/transripts with this domain View on EBI InterPro Service
ProSiteProfiles	PS50119 View details on PS50119 Search for proteins/transripts with this domain View external data on PS50119	1	46	46	8.532	IPR000315 Show description in modal box View details on IPR000315 Search for proteins/transripts with this domain View on EBI InterPro Service
CDD	cd00021 View details on cd00021 Search for proteins/transripts with this domain View external data on cd00021	4	33	30	0.0023165	–
ProSiteProfiles	PS50119 View details on PS50119 Search for proteins/transripts with this domain View external data on PS50119	43	87	45	10.096	IPR000315 Show description in modal box View details on IPR000315 Search for proteins/transripts with this domain View on EBI InterPro Service
CDD	cd00021 View details on cd00021 Search for proteins/transripts with this domain View external data on cd00021	47	87	41	2.64E-04	–
SMART	SM00336 View details on SM00336 Search for proteins/transripts with this domain View external data on SM00336	48	87	40	0.11	IPR000315 Show description in modal box View details on IPR000315 Search for proteins/transripts with this domain View on EBI InterPro Service
PANTHER	PTHR31717 View details on PTHR31717 Search for proteins/transripts with this domain View external data on PTHR31717	146	379	234	7.60E-172	–
PANTHER	PTHR31717:SF14 View details on PTHR31717:SF14 Search for proteins/transripts with this domain View external data on PTHR31717:SF14	146	379	234	7.60E-172	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	354	380	27	–	–

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0008270 View details of GO:0008270 AmiGO InterPro QuickGO	Molecular function	Zinc ion binding	Interacting selectively and non-covalently with zinc (Zn) ions.	Subterm of View details of GO:0046914

Genome browser

LORE1 insertions 22

Expression data

Expression pattern

Expression pattern of Lj5g3v2179650.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj5g3v2179650.1, powered by CORGI.

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