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Lj6g3v0290900.1

Overview

Field Value
Gene ID Lj6g3v0290900
Transcript ID Lj6g3v0290900.1
Lotus japonicus genome version MG20 v3.0
Description glycine-rich RNA-binding protein PsGRBP [Pisum sativum] gi|1778374|gb|AAB71417.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR24012
5 12 8 7.40E-25 –
SUPERFAMILY
SSF54928
33 105 73 1.01E-25
IPR012677
Gene3D
G3DSA:3.30.70.330
34 105 72 3.10E-27
IPR012677
PANTHER
PTHR24012
35 105 71 7.40E-25 –
ProSiteProfiles
PS50102
36 105 70 19.962
IPR000504
SMART
SM00360
37 105 69 1.20E-18
IPR000504
Pfam
PF00076
38 105 68 1.90E-21
IPR000504

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003676
Molecular function Nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
Subterm of

Genome browser

LORE1 insertions 10

Expression data

Expression pattern

Expression pattern of Lj6g3v0290900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj6g3v0290900.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.