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Lj6g3v0326230.1

Overview

Field Value
Gene ID Lj6g3v0326230
Transcript ID Lj6g3v0326230.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: transcription factor RF2b-like [Cicer arietinum] gi|502129606|ref|XP_004500364.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 68 68 – –
PANTHER
PTHR13690:SF82
7 370 364 1.10E-223 –
PANTHER
PTHR13690
7 370 364 1.10E-223 –
MobiDBLite
mobidb-lite
91 143 53 – –
SMART
SM00338
168 232 65 4.50E-15
IPR004827
ProSiteProfiles
PS50217
170 233 64 10.381
IPR004827
SUPERFAMILY
SSF57959
172 222 51 3.80E-11 –
Gene3D
G3DSA:1.20.5.170
172 223 52 4.10E-10 –
Pfam
PF00170
172 229 58 4.40E-09
IPR004827
CDD
cd14703
173 220 48 1.19E-23 –
Coils
Coil
188 215 28 – –
MobiDBLite
mobidb-lite
291 327 37 – –
MobiDBLite
mobidb-lite
350 370 21 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003700
Molecular function DNA-binding transcription factor activity A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons.
Subterm of
GO:0006355
Biological process Regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
Subterm of
Regulates

Genome browser

LORE1 insertions 10

Expression data

Expression pattern

Expression pattern of Lj6g3v0326230.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj6g3v0326230.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.