Transcript — View — Lotus Base

Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

Lj6g3v0483990.1

Overview

Field	Value
Gene ID	Lj6g3v0483990
Transcript ID	Lj6g3v0483990.1
Lotus japonicus genome version	MG20 v3.0
Description	PREDICTED: sorting and assembly machinery component 50 homolog isoform X1 [Cicer arietinum] gi\|502130034\|ref\|XP_004500508.1\|
Working Lj name	n.a.

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	1	63	63	–	–
PANTHER	PTHR12815:SF15 View details on PTHR12815:SF15 Search for proteins/transripts with this domain View external data on PTHR12815:SF15	69	414	346	1.40E-164	–
PANTHER	PTHR12815 View details on PTHR12815 Search for proteins/transripts with this domain View external data on PTHR12815	69	414	346	1.40E-164	–
Pfam	PF07244 View details on PF07244 Search for proteins/transripts with this domain View external data on PF07244	85	161	77	2.20E-07	IPR010827 Show description in modal box View details on IPR010827 Search for proteins/transripts with this domain View on EBI InterPro Service
Pfam	PF01103 View details on PF01103 Search for proteins/transripts with this domain View external data on PF01103	191	534	344	4.30E-26	IPR000184 Show description in modal box View details on IPR000184 Search for proteins/transripts with this domain View on EBI InterPro Service
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	408	430	23	–	–
PANTHER	PTHR12815:SF15 View details on PTHR12815:SF15 Search for proteins/transripts with this domain View external data on PTHR12815:SF15	432	537	106	1.40E-164	–
PANTHER	PTHR12815 View details on PTHR12815 Search for proteins/transripts with this domain View external data on PTHR12815	432	537	106	1.40E-164	–

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0019867 View details of GO:0019867 AmiGO InterPro QuickGO	Cellular component	Outer membrane	The external membrane of Gram-negative bacteria or certain organelles such as mitochondria and chloroplasts; freely permeable to most ions and metabolites.	Subterm of View details of GO:0016020

Genome browser

LORE1 insertions 5

Expression data

Expression pattern

Expression pattern of Lj6g3v0483990.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj6g3v0483990.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.