Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

Lj6g3v0636350.1

Overview

Field Value
Gene ID Lj6g3v0636350
Transcript ID Lj6g3v0636350.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: heterogeneous nuclear ribonucleoprotein F-like [Cicer arietinum] gi|502129153|ref|XP_004500202.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 31 31 – –
PANTHER
PTHR13976:SF40
8 266 259 3.70E-177 –
PANTHER
PTHR13976
8 266 259 3.70E-177 –
SUPERFAMILY
SSF54928
50 141 92 3.39E-16
IPR012677
Gene3D
G3DSA:3.30.70.330
52 147 96 1.20E-16
IPR012677
CDD
cd12254
63 132 70 2.36E-21 –
SMART
SM00360
63 132 70 0.0012
IPR000504
MobiDBLite
mobidb-lite
146 172 27 – –
Gene3D
G3DSA:3.30.70.330
160 266 107 3.00E-25
IPR012677
SUPERFAMILY
SSF54928
170 263 94 1.75E-21
IPR012677
ProSiteProfiles
PS50102
178 255 78 10.019
IPR000504
SMART
SM00360
179 251 73 8.90E-10
IPR000504
CDD
cd12254
179 251 73 5.37E-31 –
Pfam
PF00076
181 248 68 3.40E-10
IPR000504

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003676
Molecular function Nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
Subterm of

Genome browser

LORE1 insertions 4

Expression data

Expression pattern

Expression pattern of Lj6g3v0636350.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj6g3v0636350.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.