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Lj6g3v0637380.1

Overview

Field Value
Gene ID Lj6g3v0637380
Transcript ID Lj6g3v0637380.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: heterogeneous nuclear ribonucleoprotein F-like [Glycine max] gi|356527218|ref|XP_003532209.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR13976
1 263 263 5.90E-178 –
MobiDBLite
mobidb-lite
1 27 27 – –
PANTHER
PTHR13976:SF40
1 263 263 5.90E-178 –
SUPERFAMILY
SSF54928
47 138 92 2.82E-15
IPR012677
Gene3D
G3DSA:3.30.70.330
49 144 96 1.80E-15
IPR012677
CDD
cd12254
60 129 70 2.92E-20 –
SMART
SM00360
60 129 70 0.0035
IPR000504
MobiDBLite
mobidb-lite
144 169 26 – –
Gene3D
G3DSA:3.30.70.330
157 263 107 2.90E-25
IPR012677
SUPERFAMILY
SSF54928
167 260 94 1.75E-21
IPR012677
ProSiteProfiles
PS50102
175 252 78 10.019
IPR000504
SMART
SM00360
176 248 73 8.90E-10
IPR000504
CDD
cd12254
176 248 73 6.09E-31 –
Pfam
PF00076
178 245 68 3.30E-10
IPR000504

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003676
Molecular function Nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
Subterm of

Genome browser

LORE1 insertions 3

Expression data

Expression pattern

Expression pattern of Lj6g3v0637380.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj6g3v0637380.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.