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Lj6g3v0754260.1

Overview

Field Value
Gene ID Lj6g3v0754260
Transcript ID Lj6g3v0754260.1
Lotus japonicus genome version MG20 v3.0
Description RNA-binding family protein isoform 1 [Theobroma cacao] gi|508720132|gb|EOY12029.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR24012
15 40 26 1.70E-76 –
PANTHER
PTHR24012:SF425
15 40 26 1.70E-76 –
MobiDBLite
mobidb-lite
54 76 23 – –
Gene3D
G3DSA:3.30.70.330
217 298 82 2.70E-22
IPR012677
PANTHER
PTHR24012:SF425
220 304 85 1.70E-76 –
SUPERFAMILY
SSF54928
220 320 101 2.01E-23
IPR012677
PANTHER
PTHR24012
220 304 85 1.70E-76 –
ProSiteProfiles
PS50102
221 299 79 13.277
IPR000504
SMART
SM00360
222 295 74 1.40E-18
IPR000504
Pfam
PF00076
223 291 69 1.60E-13
IPR000504
CDD
cd12372
227 296 70 9.23E-32 –
MobiDBLite
mobidb-lite
312 378 67 – –
PANTHER
PTHR24012
340 374 35 1.70E-76 –
PANTHER
PTHR24012:SF425
340 374 35 1.70E-76 –
PANTHER
PTHR24012:SF425
403 477 75 1.70E-76 –
PANTHER
PTHR24012
403 477 75 1.70E-76 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003676
Molecular function Nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
Subterm of

Genome browser

LORE1 insertions 7

Expression data

Expression pattern

Expression pattern of Lj6g3v0754260.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj6g3v0754260.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.