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Lj6g3v1162830.1

Overview

Field	Value
Gene ID	Lj6g3v1162830
Transcript ID	Lj6g3v1162830.1
Related isoforms 1	Lj6g3v1162830.2
Lotus japonicus genome version	MG20 v3.0
Description	PREDICTED: sucrose synthase-like isoform X1 [Cicer arietinum] gi\|502086199\|ref\|XP_004488141.1\|
Working Lj name	n.a.

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
PANTHER	PTHR12526:SF391 View details on PTHR12526:SF391 Search for proteins/transripts with this domain View external data on PTHR12526:SF391	1	778	778	0	–
PANTHER	PTHR12526 View details on PTHR12526 Search for proteins/transripts with this domain View external data on PTHR12526	1	778	778	0	–
Pfam	PF00862 View details on PF00862 Search for proteins/transripts with this domain View external data on PF00862	8	553	546	1.90E-282	IPR000368 Show description in modal box View details on IPR000368 Search for proteins/transripts with this domain View on EBI InterPro Service
TIGRFAM	TIGR02470 View details on TIGR02470 Search for proteins/transripts with this domain View external data on TIGR02470	25	778	754	0	IPR012820 Show description in modal box View details on IPR012820 Search for proteins/transripts with this domain View on EBI InterPro Service
CDD	cd03800 View details on cd03800 Search for proteins/transripts with this domain View external data on cd03800	278	762	485	5.37E-131	–
SUPERFAMILY	SSF53756 View details on SSF53756 Search for proteins/transripts with this domain View external data on SSF53756	295	763	469	9.03E-51	–
Gene3D	G3DSA:3.40.50.2000 View details on G3DSA:3.40.50.2000 Search for proteins/transripts with this domain View external data on G3DSA:3.40.50.2000	539	745	207	2.00E-17	–
Pfam	PF00534 View details on PF00534 Search for proteins/transripts with this domain View external data on PF00534	558	737	180	1.20E-30	IPR001296 Show description in modal box View details on IPR001296 Search for proteins/transripts with this domain View on EBI InterPro Service

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0005985 View details of GO:0005985 AmiGO InterPro QuickGO	Biological process	Sucrose metabolic process	The chemical reactions and pathways involving sucrose, the disaccharide fructofuranosyl-glucopyranoside.	Subterm of View details of GO:0005984
GO:0016157 View details of GO:0016157 AmiGO InterPro QuickGO	Molecular function	Sucrose synthase activity	Catalysis of the reaction: UDP-glucose + D-fructose = UDP + sucrose.	Subterm of View details of GO:0035251

Genome browser

Expression data

Expression pattern

Expression pattern of Lj6g3v1162830.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj6g3v1162830.1, powered by CORGI.

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