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Lj6g3v1176160.1

Overview

Field	Value
Gene ID	Lj6g3v1176160
Transcript ID	Lj6g3v1176160.1
Lotus japonicus genome version	MG20 v3.0
Description	PREDICTED: protein TIFY 10A-like [Cicer arietinum] gi\|502086079\|ref\|XP_004488102.1\|
Working Lj name	n.a.

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
PANTHER	PTHR33077 View details on PTHR33077 Search for proteins/transripts with this domain View external data on PTHR33077	2	255	254	7.00E-53	–
PANTHER	PTHR33077:SF13 View details on PTHR33077:SF13 Search for proteins/transripts with this domain View external data on PTHR33077:SF13	2	255	254	7.00E-53	–
ProSiteProfiles	PS51320 View details on PS51320 Search for proteins/transripts with this domain View external data on PS51320	111	146	36	15.456	IPR010399 Show description in modal box View details on IPR010399 Search for proteins/transripts with this domain View on EBI InterPro Service
SMART	SM00979 View details on SM00979 Search for proteins/transripts with this domain View external data on SM00979	111	146	36	1.60E-09	IPR010399 Show description in modal box View details on IPR010399 Search for proteins/transripts with this domain View on EBI InterPro Service
Pfam	PF06200 View details on PF06200 Search for proteins/transripts with this domain View external data on PF06200	114	144	31	6.80E-16	IPR010399 Show description in modal box View details on IPR010399 Search for proteins/transripts with this domain View on EBI InterPro Service
Pfam	PF09425 View details on PF09425 Search for proteins/transripts with this domain View external data on PF09425	209	233	25	1.70E-15	IPR018467 Show description in modal box View details on IPR018467 Search for proteins/transripts with this domain View on EBI InterPro Service

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

Unable to find any GO terms for the transcript with the identifier.

Genome browser

LORE1 insertions 3

Expression data

Expression pattern

Expression pattern of Lj6g3v1176160.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj6g3v1176160.1, powered by CORGI.

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