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Lj6g3v1422190.1

Overview

Field Value
Gene ID Lj6g3v1422190
Transcript ID Lj6g3v1422190.1
Related isoforms 1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: nucleolar protein 10-like [Glycine max] gi|356529461|ref|XP_003533310.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR14927
1 356 356 5.80E-174 –
PANTHER
PTHR14927:SF0
1 356 356 5.80E-174 –
SMART
SM00320
3 49 47 4.7
IPR001680
SUPERFAMILY
SSF50978
20 130 111 3.89E-15
IPR017986
Gene3D
G3DSA:2.130.10.10
21 126 106 2.40E-12
IPR015943
SMART
SM00320
52 95 44 1.6
IPR001680
Pfam
PF08159
289 316 28 3.90E-11
IPR012580
MobiDBLite
mobidb-lite
314 369 56 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005515
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Subterm of
GO:0005634
Cellular component Nucleus A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
Subterm of

Genome browser

LORE1 insertions 3

Expression data

Expression pattern

Expression pattern of Lj6g3v1422190.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj6g3v1422190.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.