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Lj6g3v1493510.4

Overview

Field Value
Gene ID Lj6g3v1493510
Transcript ID Lj6g3v1493510.4
Related isoforms 3
Lotus japonicus genome version MG20 v3.0
Description Ubiquitin carboxyl-terminal hydrolase family protein [Medicago truncatula] gi|357513213|ref|XP_003626895.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
ProSiteProfiles 11 132 122 14.254
Gene3D 12 133 122 2.50E-06
CDD 13 132 120 2.52E-13
SUPERFAMILY 13 138 126 3.43E-18
Pfam 18 132 115 3.50E-07
Coils 262 321 60
Gene3D 267 319 53 6.00E-04

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).

LORE1 insertions 2

Expression data

Expression pattern

Expression pattern of Lj6g3v1493510.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj6g3v1493510.4, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.