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Lj6g3v1493510.4

Overview

Field	Value
Gene ID	Lj6g3v1493510
Transcript ID	Lj6g3v1493510.4
Related isoforms 3	Lj6g3v1493510.1 Lj6g3v1493510.2 Lj6g3v1493510.3
Lotus japonicus genome version	MG20 v3.0
Description	Ubiquitin carboxyl-terminal hydrolase family protein [Medicago truncatula] gi\|357513213\|ref\|XP_003626895.1\|
Working Lj name	n.a.

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
ProSiteProfiles	PS50144 View details on PS50144 Search for proteins/transripts with this domain View external data on PS50144	11	132	122	14.254	IPR002083 Show description in modal box View details on IPR002083 Search for proteins/transripts with this domain View on EBI InterPro Service
Gene3D	G3DSA:2.60.210.10 View details on G3DSA:2.60.210.10 Search for proteins/transripts with this domain View external data on G3DSA:2.60.210.10	12	133	122	2.50E-06	IPR008974 Show description in modal box View details on IPR008974 Search for proteins/transripts with this domain View on EBI InterPro Service
CDD	cd00121 View details on cd00121 Search for proteins/transripts with this domain View external data on cd00121	13	132	120	2.52E-13	–
SUPERFAMILY	SSF49599 View details on SSF49599 Search for proteins/transripts with this domain View external data on SSF49599	13	138	126	3.43E-18	IPR008974 Show description in modal box View details on IPR008974 Search for proteins/transripts with this domain View on EBI InterPro Service
Pfam	PF00917 View details on PF00917 Search for proteins/transripts with this domain View external data on PF00917	18	132	115	3.50E-07	IPR002083 Show description in modal box View details on IPR002083 Search for proteins/transripts with this domain View on EBI InterPro Service
Coils	Coil View details on Coil Search for proteins/transripts with this domain	262	321	60	–	–
Gene3D	G3DSA:1.20.5.340 View details on G3DSA:1.20.5.340 Search for proteins/transripts with this domain View external data on G3DSA:1.20.5.340	267	319	53	6.00E-04	–

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0005515 View details of GO:0005515 AmiGO InterPro QuickGO	Molecular function	Protein binding	Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).	Subterm of View details of GO:0005488

Genome browser

LORE1 insertions 2

Expression data

Expression pattern

Expression pattern of Lj6g3v1493510.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj6g3v1493510.4, powered by CORGI.

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