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Lj6g3v1643230.1

Overview

Field Value
Gene ID Lj6g3v1643230
Transcript ID Lj6g3v1643230.1
Lotus japonicus genome version MG20 v3.0
Description ZAC [Medicago truncatula] gi|357448507|ref|XP_003594529.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR23180:SF245
1 167 167 7.20E-108 –
PANTHER
PTHR23180
1 167 167 7.20E-108 –
SUPERFAMILY
SSF57863
2 50 49 9.42E-07 –
SUPERFAMILY
SSF49562
85 167 83 1.34E-24
IPR000008
Gene3D
G3DSA:2.60.40.150
86 167 82 8.50E-25
IPR000008
Pfam
PF00168
89 167 79 3.60E-22
IPR000008
SMART
SM00239
90 167 78 9.40E-07
IPR000008
ProSiteProfiles
PS50004
91 167 77 16.154
IPR000008
PRINTS
PR00360
105 117 13 6.40E-05
IPR000008
PRINTS
PR00360
129 142 14 6.40E-05
IPR000008
PRINTS
PR00360
150 158 9 6.40E-05
IPR000008

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

Genome browser

LORE1 insertions 2

Expression data

Expression pattern

Expression pattern of Lj6g3v1643230.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj6g3v1643230.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.