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| Field | Value |
|---|---|
| Gene ID | Lj6g3v1675410 |
| Transcript ID | Lj6g3v1675410.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: cleavage and polyadenylation specificity factor CPSF30-like [Glycine max] gi|356555859|ref|XP_003546247.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| ProSiteProfiles | 1 | 13 | 13 | 6.305 | ||
| PANTHER | 1 | 462 | 462 | 7.20E-233 | – | |
| PANTHER | 1 | 462 | 462 | 7.20E-233 | – | |
| ProSiteProfiles | 14 | 38 | 25 | 7.93 | ||
| SMART | 14 | 40 | 27 | 0.049 | ||
| ProSiteProfiles | 40 | 67 | 28 | 12.803 | ||
| SMART | 42 | 66 | 25 | 0.024 | ||
| MobiDBLite | 123 | 157 | 35 | – | – | |
| Coils | 133 | 153 | 21 | – | – | |
| Pfam | 175 | 309 | 135 | 1.30E-45 | ||
| ProSiteProfiles | 175 | 310 | 136 | 58.718 | ||
| MobiDBLite | 327 | 385 | 59 | – | – | |
| MobiDBLite | 488 | 606 | 119 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | RNA binding | Interacting selectively and non-covalently with an RNA molecule or a portion thereof. | ||
| Molecular function | Metal ion binding | Interacting selectively and non-covalently with any metal ion. |
Expression pattern of Lj6g3v1675410.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj6g3v1675410.1, powered by CORGI.
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