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Lj6g3v1709500.1

Overview

Field	Value
Gene ID	Lj6g3v1709500
Transcript ID	Lj6g3v1709500.1
Lotus japonicus genome version	MG20 v3.0
Description	PREDICTED: WEB family protein At1g12150-like [Cicer arietinum] gi\|502079762\|ref\|XP_004486360.1\|
Working Lj name	n.a.

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
PANTHER	PTHR32054 View details on PTHR32054 Search for proteins/transripts with this domain View external data on PTHR32054	1	448	448	5.00E-150	–
PANTHER	PTHR32054:SF3 View details on PTHR32054:SF3 Search for proteins/transripts with this domain View external data on PTHR32054:SF3	1	448	448	5.00E-150	–
Coils	Coil View details on Coil Search for proteins/transripts with this domain	1	21	21	–	–
Pfam	PF05701 View details on PF05701 Search for proteins/transripts with this domain View external data on PF05701	4	446	443	2.40E-28	IPR008545 Show description in modal box View details on IPR008545 Search for proteins/transripts with this domain View on EBI InterPro Service
Coils	Coil View details on Coil Search for proteins/transripts with this domain	25	66	42	–	–
Coils	Coil View details on Coil Search for proteins/transripts with this domain	88	122	35	–	–
Coils	Coil View details on Coil Search for proteins/transripts with this domain	127	147	21	–	–
Coils	Coil View details on Coil Search for proteins/transripts with this domain	153	180	28	–	–
Coils	Coil View details on Coil Search for proteins/transripts with this domain	185	261	77	–	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	242	261	20	–	–
Coils	Coil View details on Coil Search for proteins/transripts with this domain	280	339	60	–	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	281	308	28	–	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	440	464	25	–	–

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

Unable to find any GO terms for the transcript with the identifier.

Genome browser

LORE1 insertions 7

Expression data

Expression pattern

Expression pattern of Lj6g3v1709500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj6g3v1709500.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.