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Lj6g3v1984570.1

Overview

Field	Value
Gene ID	Lj6g3v1984570
Transcript ID	Lj6g3v1984570.1
Lotus japonicus genome version	MG20 v3.0
Description	SAP30-binding protein [Medicago truncatula] gi\|357442367\|ref\|XP_003591461.1\|
Working Lj name	n.a.

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	1	49	49	–	–
PANTHER	PTHR13464 View details on PTHR13464 Search for proteins/transripts with this domain View external data on PTHR13464	4	55	52	1.40E-94	IPR012479 Show description in modal box View details on IPR012479 Search for proteins/transripts with this domain View on EBI InterPro Service
PANTHER	PTHR13464 View details on PTHR13464 Search for proteins/transripts with this domain View external data on PTHR13464	96	379	284	1.40E-94	IPR012479 Show description in modal box View details on IPR012479 Search for proteins/transripts with this domain View on EBI InterPro Service
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	201	225	25	–	–
Pfam	PF07818 View details on PF07818 Search for proteins/transripts with this domain View external data on PF07818	220	313	94	8.90E-27	IPR012479 Show description in modal box View details on IPR012479 Search for proteins/transripts with this domain View on EBI InterPro Service
Coils	Coil View details on Coil Search for proteins/transripts with this domain	301	321	21	–	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	306	338	33	–	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	359	381	23	–	–

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0006355 View details of GO:0006355 AmiGO InterPro QuickGO	Biological process	Regulation of transcription, DNA-templated	Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.	Subterm of View details of GO:0010468 View details of GO:1903506 View details of GO:2000112 Regulates View details of GO:0006351

Genome browser

LORE1 insertions 6

Expression data

Expression pattern

Expression pattern of Lj6g3v1984570.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj6g3v1984570.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.