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Lj6g3v2116860.2

Overview

Field Value
Gene ID Lj6g3v2116860
Transcript ID Lj6g3v2116860.2
Related isoforms 1
Lotus japonicus genome version MG20 v3.0
Description D6-type cyclin isoform 1 [Theobroma cacao] gi|508781210|gb|EOY28466.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR10177:SF240
2 267 266 1.80E-124 –
PANTHER
PTHR10177
2 267 266 1.80E-124 –
SUPERFAMILY
SSF47954
22 143 122 4.04E-22
IPR013763
Pfam
PF00134
45 143 99 4.60E-16
IPR006671
Gene3D
G3DSA:1.10.472.10
49 137 89 5.60E-18
IPR013763
SMART
SM00385
52 137 86 1.80E-05
IPR013763
CDD
cd00043
61 136 76 1.30E-10 –
SUPERFAMILY
SSF47954
129 243 115 2.27E-11
IPR013763
Gene3D
G3DSA:1.10.472.10
138 242 105 3.30E-11
IPR013763
Pfam
PF02984
146 241 96 8.50E-11
IPR004367
SMART
SM01332
146 264 119 3.20E-04
IPR004367

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0042025
Cellular component Host cell nucleus A membrane-bounded organelle as it is found in the host cell in which chromosomes are housed and replicated. The host is defined as the larger of the organisms involved in a symbiotic interaction.
Subterm of

Genome browser

LORE1 insertions 10

Expression data

Expression pattern

Expression pattern of Lj6g3v2116860.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj6g3v2116860.2, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.