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LotjaGi0g1v0001400.1

Overview

Field Value
Gene ID LotjaGi0g1v0001400
Transcript ID LotjaGi0g1v0001400.1
Lotus japonicus genome version Gifu v1.2
Description Ribonuclease H; TAIR: AT5G61090.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein; Swiss-Prot: sp|P0C2F6|RNHX1_ARATH Putative ribonuclease H protein At1g65750; TrEMBL-Plants: tr|I3T7V1|I3T7V1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi0g1v0001400
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr0:1842997..1844893) extracted from Lotus japonicus Gifu genome v1.2.

CAGCAACAATGATGAATCTTCATCTCATTTATCATGAAATAATGAAACCTCAGAAAATCCCAAAATCTCTCACAAAGAGA AAACAATTGGTGTTGCTCTCCATGATCCCCCATTTTCTCCCAAAACATAAACATCACATTCATTCCTTTTTTCATTCATC AATTTCCCAAATCCTTATTTTCGTCCTTTGAACTTTCTTCAAATTTATTCTCCCTCTGGTGGTGCCGTGTTGGCCATGGC AGCAGAAACTGGGGGAAGAGGAAGCTCTCATCCCCACCATCTCTGCAAAGCCCATCCTTTCCTACTCACCTACCTGCATC GAAACCCTCTTTTGTCAAAAGAACCTAGATCACGAAAATCGCTCGATGAGGCGACGAACCCAGATCGAGGTTGGTTGCTT CCTCTTCTCGTAGATCTGGGTTGCTTCCTCTTCTGGGTTGCCATTTTGGTATTTTCTGGAGGTTGGTGGTGGTTGTTCTA ACGACAACGAACCCCGATCAAGGTTAGTTGGAGGTAGCGACGGTAACAAGCGTGAAAGGAAGGAGCTTGGTTGTTCAAAA GTGTCTATGGGAATCCTGTGGGGTATTTAAAATTTAAATTTTTTAATATACCCACATGTTTTCCTATATATATATATATA TATATATATATATATATATATACCAGTGGCTCATCCAAGATCGTCTAGACCCTACTCCCACAGCTGCTTGGTCCTGGCTT TGGCGTTTGAAGGGGCCTTTCAAGATCATTTTTCTGCTTTGGTTATGTTGTCGTGACACCCTCCCGGTGAACCAACTTCA TTTCCACAGAGGTATGGCTGCAACTCCTCTATGTGCTCGTTGTAATTTGTATCCCGAGACGGTTCTCCATTGCCTTCGTG ACTGCTGGTTCGCTCGCCGAATTTGGATTCAGATGGGTCTCCCCCCAACCATGTATCCTTTGCAGCGGTTGACACTCGTG ACTGGCTCCGTTGTGTGCTTGAGGGAGGTGAAGCGTCGGGTTTGGCTACCGTCTGGGGCATTTGGGAAGCTCAGAATCAA GCGTCCATTGCCCAGACTATAATTCCGGAGGGAAAGCTTCTGCACACTATTCAGGAGCATCGAAGCCTTCTGCTGTAGTT ATGGTCCTCCTCGCAGCCTGTTGCTCCACCTCGGATGGTGTCTTCGACAGCTCCGGTGGCTCCTGCAGTCGCTGTTAACT ATGATGGTAGCTCCTTGGGTGAGCCAGTTCGATCGGGGTTCGGTGGGTGCGTTCAGAACTCTAATGGTGGCTGGCTTGGT GAGTTCATGGGACACGGTGCTCAAGGGTCAGTTCTTCGAATGGAGCTTCTAGCCATTTTGCACGGTTTGAAGTTACCTTG GAACTCGGGACATCGCCAGGTAGAGTGTTTCTCTGATTCGGTGTTGGCTGTCAACCTGATCCAGCAACCCCCCTCTCACT TTCATGTGGAAGCCGTCTTGGTCAGCTCGATTCTGGAGCTGTTGAACAGAGATTGGATGGTCCGGGTGGCTCATGTTTTA CGTGAAGGCAATCCGTGTGCGGATTTTTAGCGAAAGCAGGTGTTGTGCAGGAGCATGCTTACCTCCTCCTCCTCCCGGAT CCCCCTCCTGAAATGGAGGCCTTGCTTCTTGCTGACTCGCTGGGTTATATGACTATTATGCAATAGGGTTTTTTGCTTTC TTGTTTCCTTTGTTCTCTTTGTCGTTTTGCATCAACAAAAAAAATCCACTGTTGCTTTGAATTGAAACCACAAAGCTTCT TCCTTTGAGAGAATTTTGGTGTAGCAGAACAATAAACTTTAATGGGTATGTGTTGTTTCTTCCAAATTTCCTTGCTTTTT GCTTTTTGGCATCTGGGTTTTGATAATTTGTGTGTTGTTTACTTCTTTCAATCTTGG
Download Genomic Sequence

CDS sequence (LotjaGi0g1v0001400.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGTGTCTTCGACAGCTCCGGTGGCTCCTGCAGTCGCTGTTAACTATGATGGTAGCTCCTTGGGTGAGCCAGTTCGATC GGGGTTCGGTGGGTGCGTTCAGAACTCTAATGGTGGCTGGCTTGGTGAGTTCATGGGACACGGTGCTCAAGGGTCAGTTC TTCGAATGGAGCTTCTAGCCATTTTGCACGGTTTGAAGTTACCTTGGAACTCGGGACATCGCCAGGTAGAGTGTTTCTCT GATTCGGTGTTGGCTGTCAACCTGATCCAGCAACCCCCCTCTCACTTTCATGTGGAAGCCGTCTTGGTCAGCTCGATTCT GGAGCTGTTGAACAGAGATTGGATGGTCCGGGTGGCTCATGTTTTACGTGAAGGCAATCCGTGTGCGGATTTTTAG
Download CDS Sequence

Protein sequence (LotjaGi0g1v0001400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MVSSTAPVAPAVAVNYDGSSLGEPVRSGFGGCVQNSNGGWLGEFMGHGAQGSVLRMELLAILHGLKLPWNSGHRQVECFS DSVLAVNLIQQPPSHFHVEAVLVSSILELLNRDWMVRVAHVLREGNPCADF
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
ProSiteProfiles
PS50879
8 131 124 11.885
IPR002156
Gene3D
G3DSA:3.30.420.10
11 131 121 2.9E-17
IPR036397
SUPERFAMILY
SSF53098
12 131 120 5.69E-17
IPR012337
CDD
cd06222
14 131 118 3.05172E-34 –
Pfam
PF13456
15 130 116 1.5E-17
IPR002156
PANTHER
PTHR34023:SF2
26 131 106 4.7E-28 –
PANTHER
PTHR34023
26 131 106 4.7E-28 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003676
Molecular function Nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
Subterm of
GO:0004523
Molecular function RNA-DNA hybrid ribonuclease activity Catalysis of the endonucleolytic cleavage of RNA in RNA-DNA hybrids to 5'-phosphomonoesters.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi0g1v0001400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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