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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0003700 |
| Transcript ID | LotjaGi1g1v0003700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Polyprotein; TAIR: AT2G01330.1 nucleotide binding protein; Swiss-Prot: sp|Q54K57|TPSA_DICDI Alpha,alpha-trehalose-phosphate synthase [UDP]-forming] A; TrEMBL-Plants: tr|A0A151QVP5|A0A151QVP5_CAJCA Polyprotein; Found in the gene: LotjaGi1g1v0003700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:741025..742863) extracted from Lotus japonicus Gifu genome v1.2.
AAATAACTCATATTAAAGGAGATAGTAACTCCCTTCCAGATTTTCTAACAAGAGAATTTTTACAGGGTAAACATGAGTGA AAAGCCCAAGTCAAAAGATCAATATGGACCCCCACTGGGTTCATCTTCAACATCCAAAGACAAAGCACTTGCAATAACTC CCCTCAAAAGTGCTGGAACATCTGCACCAGCCACCCCTTCAAAATCCTCTCAAAGACTTACTACCTCACAAATTGTCAAA ACACCTCCTCAAAATCAAAAAGCTCCATTAGTCCCACTGGCTAATAAGTATACCGTATTAACTCAACCTTCTTCAAAACC CTCTGTCAAACCTGAACCAACAGAATATGTGGAAAAGCCGGAAGGCTTGTCATCCCTCATCATAGAAAAAGAATATTTCT CCTTATATCCAAAAGAAATAGCTGCCAAGTTATTGCCTCCCAACTTTCAATATGTTCCAGGACATCCCAAAAAGACCCGA CTCTTTTATGAGTTCATCCTGGTGGATTCTGACTCAATAGAGGTTACTCATACCCCTGACAAACAAGGGGAGATAGCCTT TTCAAAAATTAAAATCATCAAAGTTCTTTCGGAAAAAGATTGGATTGTCCCTCTTCATTACTTCAAAAACTTTTCTAGAC AGTTTGATCCACCTAGTTACAATTACTATGATTACACAGACGCTTGGTACAACGCCCTGTATCTTAGACCCTTTCAACAC TCTTGGTTCATATGGTTTCATAAGGGGATTTCGCTGAACTTCCCACAATGGTTCAAAGTCTGGTTTTACCAAGTAGGTTT GGATGAATCCATTTTCCCTGAAGAAGTCAAGCCTCTATTCAAATACTTTGTCCAAAGGACCGACTTCCTCATGGAAGAAA AACTCCTCATGTTCACTGCCTCCCAAGCCATTTCATGGATATTAACTTGGGACTGGAGATCCGTTCAAGTTTTTGATGAT ACAGAATTATACCAGCTTTATCGAATCTTTAGGATAAAGTGGTGGGCAAAGTTCAATATTTCATTAATACAGCAAACAAA AATTGAAGCCTGGATAAAAACCTATCATCTTACTCAAAAGAGCAAGAAGCAGTTATCCGCTCCCCAGGCTCCAGGTCTCT CTCAAGAAGCCTCATTCCTTCAAGAGAAGTCAAAAATTATGGCCGAATTAGCTTCAGCTAGCTCACCCAAAGAATTTCAA CAAAAAATAGACATGATAAGCCAAAAGTCAGGCTCAGATACATCATCAGTCAACAGTCGACACTACCTCCAAGATAATGA GGATGACTGTGAAGGCATCAATTATCATCCGTATGACTAAAGACAAAAGAGTCATCATCAACACTCTTCATCATGGCAGA CAAGGAATCTGCTTTTCATTATCAAAGTTTTCATTATTGTAACTAGGGCTACTTTAAATCAAGTCTAGTTACTTTATCAT TAACTATAGTTACCTTTTGTAAACCAGAATTACTTTTCGAAAAGTAATCATGGTTAAGTCTTGTTTAAATAGGTAGCCAA GTTAGAGTAGAGGGCATCGGGTTTTTTACCTACCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTATGTTTGTAATCCCTGC AGTTCATCTTTGAATAAAAGCTTTCTTCTGTAAGTACTCTGAGTTTTCATTTTTTTTCATTATTTGCAAAATGTTTTTTA GCTTCCGCCTCCCAATCTGGCTGACCAACGGACTCACTACCTCTCAGGTTTTACGGCCGGAAGCTAAAAAACATTTTGCA AATAATGAAAAAAAATGAAAACTCAGAGTACTTACAGAAGAAAGCTTTTATTCAAAGATGAACTGCAGGGATTACAAAC
CDS sequence (LotjaGi1g1v0003700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGTGAAAAGCCCAAGTCAAAAGATCAATATGGACCCCCACTGGGTTCATCTTCAACATCCAAAGACAAAGCACTTGC AATAACTCCCCTCAAAAGTGCTGGAACATCTGCACCAGCCACCCCTTCAAAATCCTCTCAAAGACTTACTACCTCACAAA TTGTCAAAACACCTCCTCAAAATCAAAAAGCTCCATTAGTCCCACTGGCTAATAAGTATACCGTATTAACTCAACCTTCT TCAAAACCCTCTGTCAAACCTGAACCAACAGAATATGTGGAAAAGCCGGAAGGCTTGTCATCCCTCATCATAGAAAAAGA ATATTTCTCCTTATATCCAAAAGAAATAGCTGCCAAGTTATTGCCTCCCAACTTTCAATATGTTCCAGGACATCCCAAAA AGACCCGACTCTTTTATGAGTTCATCCTGGTGGATTCTGACTCAATAGAGGTTACTCATACCCCTGACAAACAAGGGGAG ATAGCCTTTTCAAAAATTAAAATCATCAAAGTTCTTTCGGAAAAAGATTGGATTGTCCCTCTTCATTACTTCAAAAACTT TTCTAGACAGTTTGATCCACCTAGTTACAATTACTATGATTACACAGACGCTTGGTACAACGCCCTGTATCTTAGACCCT TTCAACACTCTTGGTTCATATGGTTTCATAAGGGGATTTCGCTGAACTTCCCACAATGGTTCAAAGTCTGGTTTTACCAA GTAGGTTTGGATGAATCCATTTTCCCTGAAGAAGTCAAGCCTCTATTCAAATACTTTGTCCAAAGGACCGACTTCCTCAT GGAAGAAAAACTCCTCATGTTCACTGCCTCCCAAGCCATTTCATGGATATTAACTTGGGACTGGAGATCCGTTCAAGTTT TTGATGATACAGAATTATACCAGCTTTATCGAATCTTTAGGATAAAGTGGTGGGCAAAGTTCAATATTTCATTAATACAG CAAACAAAAATTGAAGCCTGGATAAAAACCTATCATCTTACTCAAAAGAGCAAGAAGCAGTTATCCGCTCCCCAGGCTCC AGGTCTCTCTCAAGAAGCCTCATTCCTTCAAGAGAAGTCAAAAATTATGGCCGAATTAGCTTCAGCTAGCTCACCCAAAG AATTTCAACAAAAAATAGACATGATAAGCCAAAAGTCAGGCTCAGATACATCATCAGTCAACAGTCGACACTACCTCCAA GATAATGAGGATGACTGTGAAGGCATCAATTATCATCCGTATGACTAA
Protein sequence (LotjaGi1g1v0003700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSEKPKSKDQYGPPLGSSSTSKDKALAITPLKSAGTSAPATPSKSSQRLTTSQIVKTPPQNQKAPLVPLANKYTVLTQPS SKPSVKPEPTEYVEKPEGLSSLIIEKEYFSLYPKEIAAKLLPPNFQYVPGHPKKTRLFYEFILVDSDSIEVTHTPDKQGE IAFSKIKIIKVLSEKDWIVPLHYFKNFSRQFDPPSYNYYDYTDAWYNALYLRPFQHSWFIWFHKGISLNFPQWFKVWFYQ VGLDESIFPEEVKPLFKYFVQRTDFLMEEKLLMFTASQAISWILTWDWRSVQVFDDTELYQLYRIFRIKWWAKFNISLIQ QTKIEAWIKTYHLTQKSKKQLSAPQAPGLSQEASFLQEKSKIMAELASASSPKEFQQKIDMISQKSGSDTSSVNSRHYLQ DNEDDCEGINYHPYD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 64 | 64 | - | – | |
| MobiDBLite | 12 | 26 | 15 | - | – | |
| PANTHER | 28 | 383 | 356 | 2.9E-38 | – | |
| PANTHER | 28 | 383 | 356 | 2.9E-38 | – | |
| MobiDBLite | 34 | 60 | 27 | - | – | |
| MobiDBLite | 380 | 415 | 36 | - | – | |
| MobiDBLite | 380 | 397 | 18 | - | – | |
| MobiDBLite | 398 | 415 | 18 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0003700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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