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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0007800 |
| Transcript ID | LotjaGi1g1v0007800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RNA-binding family protein; TAIR: AT5G54580.1 RNA-binding (RRM/RBD/RNP motifs) family protein; Swiss-Prot: sp|Q9FNR1|RBG3_ARATH Glycine-rich RNA-binding protein 3, mitochondrial; TrEMBL-Plants: tr|I3SUH6|I3SUH6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0007800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:1044720..1046917) extracted from Lotus japonicus Gifu genome v1.2.
CTAAGCCCAAGCAGCAAGCCCAGTTGAGTTCTAGTGTTAGATTCCCTCAGTATCAGTGTCAGTATCAGTATCTATCTCTC TTTCTTGAATTCTCTCTCTCTCTGTCAGCTCAGTATCTCTCCGGCGGCCATGGCAATTATGAGAGCAGCAGCAGTGGCGG CGCCGAGAGGCTTGCGGCGGCTATTCTGCACGAACACGAACTCGAACTCGAACCCGAGCTCTTTCCCTTTCAATCTACCC CCTTCAGGGACCACTCGTCAGATGGCTGATCCCAGCACCAACCTCTTCGTCTCCGGTAATACCTTCTCCTTTTCTCATTT TGGGTGCTTAACACTGTAATAGGACTGAGTTCACACTTGAGACTCTTCTATCTCAATTAGTACACAACTCAATAGGTATA TATAATCAAAAACCCTAAACCCTAAACTACACCAAAAGTTGATTAGACTGATTGCTGTTTTGGCATCCTACCTGTTTTGA TTTAAACTGCAAATACTCTAAATTACTGGGTGAAGCATCAGGAAATTGAATATTCAGTAAAGCAATGTAGCCTTATAGCC TTCAAGTTCAAAGCAATGTTTTAATGGACCAAATTCCCAGGACCAAGCCCCCCTTTGGTTTTGCTCTTGCAGAGTTTTAA ATTGTCTCTTACAATTTTTATCTCATTAAACGACAATACGAGCATTATCCCACTAAGTGAGGTTGGCTATATGGATCACA CTACGCCATTGAGCTTGATTGGAAACCAGATTTTCGGAGATATTATTAATAATGAGGTCATTTTTAACAATATCTTCCAA AGTTCTTTTTGGCCTACCTCTCATTCTCCTGAATAAAAAATAAGAAAAGGAAAATTGTTTATTGCATTGCTGAGGATCCA GCATTTTTCCCATACAAGATGTCATCAGTTTTGGTATCTTAATATTTTTTCAGGGCTTTGCAAACGTACAACAACAGAAA AGCTACGGGAAGCATTTGCAAAATTTGGTGAAGTTGTTCATGGTTTGTTCTTCTTCTCTGAGCATGTGTTAACTGTGAAA TTGTTCAGCTATTTATGCTTTAACTTTTTTGTAGTTATGTCTTGTAAGTCTTATCTGAAACCATAATGGTTCTCCATTTG TTTTTTTCAGCAAGAGTGGTAACTGATCGAGTCTCAGGCTACTCCAAGGGTTTCGGTTTTGTGAAATATGCAACTATTGA AGAGGCTGGAAAGGGGATCGAAGGCATGGATGGCAAAGTAAGCTTGATTAAACCCTGATGCGTACCGTACACTGTTGTCT TAGATTTGCCTTACCTGTGTTATTCATGCAAAATAAGACTTAAATTTTACTTTGAGATAATTATACTACACATAACAGTG AACATACCAACACAACAATATAGACCCTGGCATTAGAAGATGAAAATATTATTACTTGACCGTGTCAATAATGCTTCAGT ATTCTTGAAGCACAATTATGCATGAACTTAAGTTTTGCTCAATTTCCCCCAGCTTGCTTCATACCCTGTAAATCATGTGT CAAATACTAGGCTCAAATAAATGTGCATACATTGATATAGCAACTATAGTTGAGTTTCGTTAACAGTCTGTTGATTTTTA TAGCCTTGTTCATGTTAATATTTTGGAGACCTTTCTCTTTGTTGTTCTTCTACAATGATGCTGATTGATACTGCCCCCGT GCAATACAGTATTTGGATGGATGGGTTATATTTGCAGAGTACGCAAAACCAAGACCAGCACCGGGACAACAACCTGCAGA CAATATGACTAATCAGTATGCACGGCAGTAATTCCTGTTGTTTATTTGAAACATTCTTACACCTTATTGAACTGGTCTTG CATTCATACAAGATATACTATTATGTGTAATGCGGCTACTCCTTTTTATGGTAGCTGGGATTTTCATGAGATATGGGCTG GCAGATTGATGTCTGCATGTTGTGCTTGGCTTTGAAGTTATGCCATAATCATTTAAGCTTTGACTTCAGAATTTAGTCAT CACTTTTGTCATTAGACTGGTAGAATGTATTTATCCACTCACTTTATGCTTATACTTTGAATTCCATTTTAAAAAATAAT AGTAATTCCACTATCTTTTGGGTGTCTTTTTTAAATTTGCTCGACCTATATTTTGGGGTATATCAGTATATGAAGAGACA ACTTTGTGCGTGGGCTTAAAAATTCAAATGAACAGTGA
CDS sequence (LotjaGi1g1v0007800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAATTATGAGAGCAGCAGCAGTGGCGGCGCCGAGAGGCTTGCGGCGGCTATTCTGCACGAACACGAACTCGAACTC GAACCCGAGCTCTTTCCCTTTCAATCTACCCCCTTCAGGGACCACTCGTCAGATGGCTGATCCCAGCACCAACCTCTTCG TCTCCGGGCTTTGCAAACGTACAACAACAGAAAAGCTACGGGAAGCATTTGCAAAATTTGGTGAAGTTGTTCATGCAAGA GTGGTAACTGATCGAGTCTCAGGCTACTCCAAGGGTTTCGGTTTTGTGAAATATGCAACTATTGAAGAGGCTGGAAAGGG GATCGAAGGCATGGATGGCAAATATTTGGATGGATGGGTTATATTTGCAGAGTACGCAAAACCAAGACCAGCACCGGGAC AACAACCTGCAGACAATATGACTAATCAGTATGCACGGCAGTAA
Protein sequence (LotjaGi1g1v0007800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAIMRAAAVAAPRGLRRLFCTNTNSNSNPSSFPFNLPPSGTTRQMADPSTNLFVSGLCKRTTTEKLREAFAKFGEVVHAR VVTDRVSGYSKGFGFVKYATIEEAGKGIEGMDGKYLDGWVIFAEYAKPRPAPGQQPADNMTNQYARQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_GRAM_POSITIVE | 1 | 17 | 17 | - | – | |
| PANTHER | 33 | 143 | 111 | 1.9E-42 | – | |
| PANTHER | 33 | 143 | 111 | 1.9E-42 | – | |
| SUPERFAMILY | 33 | 137 | 105 | 9.94E-30 | ||
| Gene3D | 38 | 147 | 110 | 3.6E-27 | ||
| ProSiteProfiles | 50 | 128 | 79 | 18.035 | ||
| SMART | 51 | 124 | 74 | 1.7E-20 | ||
| Pfam | 52 | 118 | 67 | 4.6E-18 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. |
Expression pattern of LotjaGi1g1v0007800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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