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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0008100 |
| Transcript ID | LotjaGi1g1v0008100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Protein DGCR14 like; TAIR: AT3G07790.1 DGCR14-like protein; Swiss-Prot: sp|O44424|DGC14_DROME Protein DGCR14 homolog; TrEMBL-Plants: tr|I1M689|I1M689_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0008100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:1066246..1067793) extracted from Lotus japonicus Gifu genome v1.2.
ATGCTTCAATCACCAGGCCATTCTCCACTCCACCTCTCTTCTCCATCTCCTTCCGTTTCCCAATTTTCTTCCCAAAACCC TAACAACAATGATTCTTCCTCGTCCTCTTCTGGTGCTGCGATTGGGAATCACCACAACCACAACCACCCTGCGGTTCTTG ACGAAGACACCTACGTCGAAGCGTTGGAGAAGATCATCGAGCGCGATTACTTCCCTGACATCTCCAAGCTCCGTGATCGA CTCGATTGGCTTGAAGCCATCAAAACCGGCGATCCCGTTCAAATTCGCGATGCCCAGTTGAAGATTATGGAGCGCCGTGG TGGAAAGAAGGTAACTTCAACCTCCAACCCTCTTGATTCTTCTAGAATTTCAGCCACACCAGGTTCCACTTTCGTCAGAA ATTTCACACCTTTAGATGAATTTGACGGTAAAACCCCTATAACACCGGGGTTTTCTGGTGCCGAGGGTGGTGGAAGTGAT GGTGGTGCTGGTGGGGGTGTGAACACTAAACTTGGGCTTGATCAGTTTTTGAGGAGGTATACTAGTGAGGATAATCATAG CTTTTCGAAGATTTTGGAGAAAGTGAATAGGAAGAGGAAAGAGAGGTTTGGGTTTTTGAATAATGGTGAGGAGGATGTGA AGGCTATTGAGGATGAAAAGAGGGATAGGATAACTGATGGTTATGGAACCTCTTATCAGCCTCCGGCTTCGTTGGAAGGT TGGAAGTACACACCGAAGAATTTGTTGATGTATCACCCTGCTGATAATGGTGAGGTGCCCTTGACTGAGGAGGAAAGGGC GGTGAGAATCAAAGGTGCCACGAAGGAGATTAGTCTTCTGAATACGAGGTTTCATGGTAAAATGATGGATTCTAGGCCGA AAGATGATGGGACCGTTGAGGTGCTTTATACCCCTGTTGCAGGTGCTACTCCGATGCCGATGCATCTTAGAGAAGGGGAT AGATTGAAGAAGTATGATCTGGATGATTTGAGGAAGACTCCGAATCCGTTTTATTTAGAATCTGAGAAAAAAGCTGAGAA TGGTTATAGCTATGTGAAGACACCATCTCCCGCACCAGGTGTTGATGATTCCCCGTTTATTACTTGGGGAGAGATAGAAG GGACGCCAATGAGGTTGGATATGGAAGATACGCCAATTGATATTGGTGGGAGTGCTGATGGACCTCATTACAATGTTCCT TCTGCTCCAGCGAGGGATGCGAAAGCACACTCACTTTCTAGGGAGGCTGCACGGAAGCTGAGGGCGAGGACAAAGATGTT TCATAAGCCCCCATTGGCATCGCCAGTTAGAGGTGGAAGTGCTAGTCCGAACATGCGCACGCTTTCTCCTGCTGCTCAGA AGTTTATGAGGAATGCAATTGCCAAGTCCTCATCTTCTGTTGATGAGTCACTCCGGGCTAGTTACCGTGGTTCGTCTCCT GCTTTGTCTACTCCTAGGAATGTTAGAAGTGTGTCTAGGTTTGCTAAAGATGGGAGCATGGCTTCCAGGTCTCCATCTGT TAGAGAGGGCTCCAACCCCCCTTGGTGA
CDS sequence (LotjaGi1g1v0008100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTTCAATCACCAGGCCATTCTCCACTCCACCTCTCTTCTCCATCTCCTTCCGTTTCCCAATTTTCTTCCCAAAACCC TAACAACAATGATTCTTCCTCGTCCTCTTCTGGTGCTGCGATTGGGAATCACCACAACCACAACCACCCTGCGGTTCTTG ACGAAGACACCTACGTCGAAGCGTTGGAGAAGATCATCGAGCGCGATTACTTCCCTGACATCTCCAAGCTCCGTGATCGA CTCGATTGGCTTGAAGCCATCAAAACCGGCGATCCCGTTCAAATTCGCGATGCCCAGTTGAAGATTATGGAGCGCCGTGG TGGAAAGAAGGTAACTTCAACCTCCAACCCTCTTGATTCTTCTAGAATTTCAGCCACACCAGGTTCCACTTTCGTCAGAA ATTTCACACCTTTAGATGAATTTGACGGTAAAACCCCTATAACACCGGGGTTTTCTGGTGCCGAGGGTGGTGGAAGTGAT GGTGGTGCTGGTGGGGGTGTGAACACTAAACTTGGGCTTGATCAGTTTTTGAGGAGGTATACTAGTGAGGATAATCATAG CTTTTCGAAGATTTTGGAGAAAGTGAATAGGAAGAGGAAAGAGAGGTTTGGGTTTTTGAATAATGGTGAGGAGGATGTGA AGGCTATTGAGGATGAAAAGAGGGATAGGATAACTGATGGTTATGGAACCTCTTATCAGCCTCCGGCTTCGTTGGAAGGT TGGAAGTACACACCGAAGAATTTGTTGATGTATCACCCTGCTGATAATGGTGAGGTGCCCTTGACTGAGGAGGAAAGGGC GGTGAGAATCAAAGGTGCCACGAAGGAGATTAGTCTTCTGAATACGAGGTTTCATGGTAAAATGATGGATTCTAGGCCGA AAGATGATGGGACCGTTGAGGTGCTTTATACCCCTGTTGCAGGTGCTACTCCGATGCCGATGCATCTTAGAGAAGGGGAT AGATTGAAGAAGTATGATCTGGATGATTTGAGGAAGACTCCGAATCCGTTTTATTTAGAATCTGAGAAAAAAGCTGAGAA TGGTTATAGCTATGTGAAGACACCATCTCCCGCACCAGGTGTTGATGATTCCCCGTTTATTACTTGGGGAGAGATAGAAG GGACGCCAATGAGGTTGGATATGGAAGATACGCCAATTGATATTGGTGGGAGTGCTGATGGACCTCATTACAATGTTCCT TCTGCTCCAGCGAGGGATGCGAAAGCACACTCACTTTCTAGGGAGGCTGCACGGAAGCTGAGGGCGAGGACAAAGATGTT TCATAAGCCCCCATTGGCATCGCCAGTTAGAGGTGGAAGTGCTAGTCCGAACATGCGCACGCTTTCTCCTGCTGCTCAGA AGTTTATGAGGAATGCAATTGCCAAGTCCTCATCTTCTGTTGATGAGTCACTCCGGGCTAGTTACCGTGGTTCGTCTCCT GCTTTGTCTACTCCTAGGAATGTTAGAAGTGTGTCTAGGTTTGCTAAAGATGGGAGCATGGCTTCCAGGTCTCCATCTGT TAGAGAGGGCTCCAACCCCCCTTGGTGA
Protein sequence (LotjaGi1g1v0008100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLQSPGHSPLHLSSPSPSVSQFSSQNPNNNDSSSSSSGAAIGNHHNHNHPAVLDEDTYVEALEKIIERDYFPDISKLRDR LDWLEAIKTGDPVQIRDAQLKIMERRGGKKVTSTSNPLDSSRISATPGSTFVRNFTPLDEFDGKTPITPGFSGAEGGGSD GGAGGGVNTKLGLDQFLRRYTSEDNHSFSKILEKVNRKRKERFGFLNNGEEDVKAIEDEKRDRITDGYGTSYQPPASLEG WKYTPKNLLMYHPADNGEVPLTEEERAVRIKGATKEISLLNTRFHGKMMDSRPKDDGTVEVLYTPVAGATPMPMHLREGD RLKKYDLDDLRKTPNPFYLESEKKAENGYSYVKTPSPAPGVDDSPFITWGEIEGTPMRLDMEDTPIDIGGSADGPHYNVP SAPARDAKAHSLSREAARKLRARTKMFHKPPLASPVRGGSASPNMRTLSPAAQKFMRNAIAKSSSSVDESLRASYRGSSP ALSTPRNVRSVSRFAKDGSMASRSPSVREGSNPPW
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 43 | 43 | - | – | |
| MobiDBLite | 1 | 52 | 52 | - | – | |
| PANTHER | 25 | 505 | 481 | 1.8E-148 | ||
| Pfam | 50 | 455 | 406 | 8.4E-98 | ||
| MobiDBLite | 106 | 125 | 20 | - | – | |
| MobiDBLite | 109 | 125 | 17 | - | – | |
| MobiDBLite | 463 | 515 | 53 | - | – | |
| MobiDBLite | 463 | 490 | 28 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0008100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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