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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0020700 |
| Transcript ID | LotjaGi1g1v0020700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Protein FRIGIDA; TAIR: AT1G31814.1 FRIGIDA like 2; Swiss-Prot: sp|A0SWL0|FRL2A_ARATH FRIGIDA-like protein 2; TrEMBL-Plants: tr|I1JJG6|I1JJG6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0020700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:2549835..2552810) extracted from Lotus japonicus Gifu genome v1.2.
CAGCCTTTGACAGAAAATAAAAACCAATCAGCCCAGTTTCTGAGAGCTAGGAAATTGTGGCCCAACAAACAACCTATTTG CTAAATGCTGACATCTTCAATAGTTGTTTCACTTGTTTGTTGGTCTTCTCCTCACAACACCTTTGAAGTCTCAACACAGA ACAGAACCATCACCACACTGATTGAATGTGGCTATAATCACTTATTCATTCAATTCAATTCAATTTCTGGTTCCAACTCT GAGTGACAAGAACAACAAGAAAAATGTCCACCCTAAAGACAATCTCAGCAGCACTGAAACTGGTTGACACCAAGAAACAG AATCTCAAGAAAGCTTACGATGATCTCCAATCTCACTCTTCTCTCCTCTCCTCCTTCCCTCTCTCATGGTCTCACCTCGA TTCCCACTTCACCTCCCTCCACAACTCCCTCTCTCAACGCTTCCTCCATCTCCAATCCCTCGAATCACAACCTAACCCTA GCAGCGATGACCCATCACCCTCTTCATCGAAATTCCCCGACCCCGACACCAAAGATCGCAACTTTTCATCATTTAGTACC GACCCACCTTCACCATCCACCCAAAACGGAACGGTTACATTGCCCGTGAACCACTCTGAAGCGTTGAATGCTCTGTGTAA AAGCATGGATGGGAAGGGGTTGAGGGATTACATTGGGGAGCATTTCAAGGACAAATTCGCTCTCAGAACTGAGCTTCAGA GTGCGTTGAAGTGTGCTGCGGATCCTGCTGCAATGGTTATTGATTCAGTGGATGGTGTTGTTGGTGTGAATGTGGTGAAG GATGATGAGAAGGAGCTGAGGAGAATGAAGAGGAGTTGCGGCGTGTTGTTTCAGCAGCTGAGGGCTGTGTCTGCTCCGCA TGTGAGTGGTAAGGTCAGGAAGAGGATCAAGAGTTTGTTTTCAGAGTGGAAGGGAAGCTTGCTGAATGATAATACTGATT CGGTTGGAGCCTTGGCTTTTTTGCATTTTGTCGCGGCGTTCGGAATGCTTTCTGAGCTGACTATGAATGAGCTTGCCACT TTCTCTTTTATGGCTTCTGCCAATGATCAGATTTCTGAGCTGACCCTGATTGCTGGTTTGGCAGATAAAGTTCCAGGTTA CAATCCCCAAATTGAATTTGATTTAAGGTTTCATTTGTGCTTTTAGGAGATAGTACTTTGTTGTTTTTGTTGTTGTTATT GTTGTTGCCAAGGGCAAATAATAGAGGGATGGTTAGTGTTATAATAAATCTTAGGAGAGGTTAGTGCAATAATGATAGAG CGATGTCACCAATAAAATAATGGTGGTTAGTGCCTGGATAAATAATAGAGGGGATGTCAGTGCAATAATGATCTACATCA CGACAATTTGCCCTTTTTGTCGTGACATGTTAATAGTTGTTGTTGTGGTGTTGGAGTTGGATTATTTATTATTAAATAGT TTGAGGTTGTAATTTGAAATGGCGACACCAATGTTATTGAATCACAGTGTCACCCTTTTACGTGGTTTAGTTTGTAAGAC AAGCTTTTGTTTATGTTTTGCAGGTCTTGTTCAGAAACTTATTGACAGGGGCAAACATGTTCTGGCTGTCAAATATATTT TTGGGTTCAATCTTGTTGATAAATTCCCACCAGTTCCCATTTTGAAAGCTCATGTGAATGAGTCAGAGAAACTTGGTAGA AGACTTGCCCACGAAGGAAAATCAGTGGTAAGTGTGTCTCCCTTGTTTGATTGCCTAGTGCGTGTTGCCACTGTGTTTAT TCATTTTGGTATTTCTTCAGAAGGAGATCACAGCTAGAGAGATCAATGCTCTGAAATCAGTGATTAAGGTTATTGAAAAT CATAATCTTGAATCTGAATTTCCCACCACTAGCATTGAGCAGCGTATAGAGGAACTGAAGAAGCTCAAGACAACACCAGC TTTTGCTGCAAAGCCTCCTCAACATCAGCAGCAGCAAAGTGGGATCAAGCGTCCTCGAATATCTGCACCAGTTGGTCCTG CAGCTGTCTTCAATAATGCCAACAGTGCCAGTTCAAACATAAACCAATACCAACAACCTCATTTTCAGTCAACAGGTTTG TTGCCAGAACATTCAAATCCATACATGAACTTGCCACCCTTGCCGTATGGCGTGATGGCCCCAACCCCAACCGTCCCGTC TTATACAGGTCCTTCAACTGGGCCTTATGGTATTGATGGTGTCCCAACAGGTCATAGTGGCAACCTTGGTGAAGGTGGTT CTCATCCAAATTCATCTGAGACACTTGTACCGTCTGGTTATTATGATAGCGTCCCTGCTTATGAAGGTTATGGTCTGCAG CACTATTACAAAACATCTTATCCACAATAGATCAAGAGATTGCTTTCTCTATCTAATATTGAACTTCTGGTTTGGTATTA TAGTCTCTCTAGGACTTTGCACTTCTTGCTTTTGGTTACTGAACGATGACTCGCTTTGCCGGCTGCCATGAGTATAGGAC AGGAACTAGATTCTATAATTACAGGCCACAATTTTAATTATTTGAATCATCTTGCATGTACAAGATTACTTTTAGGTTAA TCATGGTCTTCTTCGAACCTCCTTGTTGTTACTCTTCTTCTCTGCCTAGCATCCAGGCTTTTGGGAGGCAAAGAAACTTG AACAGGGTTTGGAAAGTAAAATCCTCTTTGCGGAAACTCTTATATTTATCTTAGCTATTTTTTGCTCTAGAATTACTTAC CATACCCTGATAGCTCTCTCTGGATTTTAACTTTGGTCTGATTTCTGCTTCTCGCAAACAGAAACTTTTTATATCCAAAG AAAATTTACCAGTTGATTTCAAAAAAAAATTATCCTGAAATGTTTGGTAACCAATATCTGAAACTCCAGTATGGAACATA GTAGAATTTTGTTGATTTTCTGTCTTCTCTTCTCATTTATTTTGAATTCCCTTATAATAATTACTGTATTTCTTGGATGT CTCTTATGAACAGGAC
CDS sequence (LotjaGi1g1v0020700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCCACCCTAAAGACAATCTCAGCAGCACTGAAACTGGTTGACACCAAGAAACAGAATCTCAAGAAAGCTTACGATGA TCTCCAATCTCACTCTTCTCTCCTCTCCTCCTTCCCTCTCTCATGGTCTCACCTCGATTCCCACTTCACCTCCCTCCACA ACTCCCTCTCTCAACGCTTCCTCCATCTCCAATCCCTCGAATCACAACCTAACCCTAGCAGCGATGACCCATCACCCTCT TCATCGAAATTCCCCGACCCCGACACCAAAGATCGCAACTTTTCATCATTTAGTACCGACCCACCTTCACCATCCACCCA AAACGGAACGGTTACATTGCCCGTGAACCACTCTGAAGCGTTGAATGCTCTGTGTAAAAGCATGGATGGGAAGGGGTTGA GGGATTACATTGGGGAGCATTTCAAGGACAAATTCGCTCTCAGAACTGAGCTTCAGAGTGCGTTGAAGTGTGCTGCGGAT CCTGCTGCAATGGTTATTGATTCAGTGGATGGTGTTGTTGGTGTGAATGTGGTGAAGGATGATGAGAAGGAGCTGAGGAG AATGAAGAGGAGTTGCGGCGTGTTGTTTCAGCAGCTGAGGGCTGTGTCTGCTCCGCATGTGAGTGGTAAGGTCAGGAAGA GGATCAAGAGTTTGTTTTCAGAGTGGAAGGGAAGCTTGCTGAATGATAATACTGATTCGGTTGGAGCCTTGGCTTTTTTG CATTTTGTCGCGGCGTTCGGAATGCTTTCTGAGCTGACTATGAATGAGCTTGCCACTTTCTCTTTTATGGCTTCTGCCAA TGATCAGATTTCTGAGCTGACCCTGATTGCTGGTTTGGCAGATAAAGTTCCAGGTCTTGTTCAGAAACTTATTGACAGGG GCAAACATGTTCTGGCTGTCAAATATATTTTTGGGTTCAATCTTGTTGATAAATTCCCACCAGTTCCCATTTTGAAAGCT CATGTGAATGAGTCAGAGAAACTTGGTAGAAGACTTGCCCACGAAGGAAAATCAGTGAAGGAGATCACAGCTAGAGAGAT CAATGCTCTGAAATCAGTGATTAAGGTTATTGAAAATCATAATCTTGAATCTGAATTTCCCACCACTAGCATTGAGCAGC GTATAGAGGAACTGAAGAAGCTCAAGACAACACCAGCTTTTGCTGCAAAGCCTCCTCAACATCAGCAGCAGCAAAGTGGG ATCAAGCGTCCTCGAATATCTGCACCAGTTGGTCCTGCAGCTGTCTTCAATAATGCCAACAGTGCCAGTTCAAACATAAA CCAATACCAACAACCTCATTTTCAGTCAACAGGTTTGTTGCCAGAACATTCAAATCCATACATGAACTTGCCACCCTTGC CGTATGGCGTGATGGCCCCAACCCCAACCGTCCCGTCTTATACAGGTCCTTCAACTGGGCCTTATGGTATTGATGGTGTC CCAACAGGTCATAGTGGCAACCTTGGTGAAGGTGGTTCTCATCCAAATTCATCTGAGACACTTGTACCGTCTGGTTATTA TGATAGCGTCCCTGCTTATGAAGGTTATGGTCTGCAGCACTATTACAAAACATCTTATCCACAATAG
Protein sequence (LotjaGi1g1v0020700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSTLKTISAALKLVDTKKQNLKKAYDDLQSHSSLLSSFPLSWSHLDSHFTSLHNSLSQRFLHLQSLESQPNPSSDDPSPS SSKFPDPDTKDRNFSSFSTDPPSPSTQNGTVTLPVNHSEALNALCKSMDGKGLRDYIGEHFKDKFALRTELQSALKCAAD PAAMVIDSVDGVVGVNVVKDDEKELRRMKRSCGVLFQQLRAVSAPHVSGKVRKRIKSLFSEWKGSLLNDNTDSVGALAFL HFVAAFGMLSELTMNELATFSFMASANDQISELTLIAGLADKVPGLVQKLIDRGKHVLAVKYIFGFNLVDKFPPVPILKA HVNESEKLGRRLAHEGKSVKEITAREINALKSVIKVIENHNLESEFPTTSIEQRIEELKKLKTTPAFAAKPPQHQQQQSG IKRPRISAPVGPAAVFNNANSASSNINQYQQPHFQSTGLLPEHSNPYMNLPPLPYGVMAPTPTVPSYTGPSTGPYGIDGV PTGHSGNLGEGGSHPNSSETLVPSGYYDSVPAYEGYGLQHYYKTSYPQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 2 | 488 | 487 | 1.3E-231 | – | |
| PANTHER | 2 | 488 | 487 | 1.3E-231 | – | |
| MobiDBLite | 67 | 112 | 46 | - | – | |
| MobiDBLite | 67 | 84 | 18 | - | – | |
| MobiDBLite | 91 | 112 | 22 | - | – | |
| Pfam | 116 | 384 | 269 | 3.5E-72 | ||
| MobiDBLite | 481 | 500 | 20 | - | – | |
| PANTHER | 483 | 524 | 42 | 1.3E-231 | – | |
| PANTHER | 483 | 524 | 42 | 1.3E-231 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0020700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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