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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0021300 |
| Transcript ID | LotjaGi1g1v0021300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Calcium-dependent lipid-binding domain-containing protein; TAIR: AT5G55530.1 Calcium-dependent lipid-binding (CaLB domain) family protein; Swiss-Prot: sp|O04133|SRC2_SOYBN Protein SRC2; TrEMBL-Plants: tr|I3SH59|I3SH59_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0021300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:2617816..2621496) extracted from Lotus japonicus Gifu genome v1.2.
GAGTTTTATGAATGAAAAAACTCAACGAAATAACTAACCTGATACGAATATTCCCGATTCGAATAAGATTATTCAAATCA TTCATTCATGAGCAATATATTATGATGAAGAAGAGAAGAGGACAGAAATGCAGTGACTCAAAAGTCATAGGTGGGGCCTG TGTGAGTACTGTGTATGTAAAGAAAAAGAGAAAGTTCTGCAGCACCAGAAAAAACAACAAGAAAGAAAAAGTCATCTGCA TCAACATCAAAGTCCCCACCTCCAACTGCAAAATGCACACCAATCAATTCTCATTGGTCTCTCTCTTTCTCTCTACAATG TCACTATTACCGTCCCTGTAACGTTGTAGTATACCTACATCATACTCCATATATAGTAAAGCTCTGCACGGCTTTCATTC CTTCACTACCACCTCGGTTCACCAACTCCTGATTGTGGATTCCTAGAGCCATAAACAAACATATATCACTGACTTTGGAA GCTAACTGGCTCAGTGCCTAAACAAGGTAAAGGAAAAACATGCAACATCATCATAGATCCTCAGTGTGTTTTTTTTTTCC TGTTTTGTTTTGGATTCTTGTTTGTTTTTTTCAAATTTTACTCACTAGTGCTATTGTTTTGACTATTGAGTGATTTGTAG AGGAGAAATTTTAGGTGGTTTTTTGTTTTGGGATTCTGTGACTTGACTTTTTGCTCTGCTTTCCCCTGTTTCCCTCCCCT TGGATTCTGGTGGCAGTGTTTCTCTGTAGAACAACAGAAAATAGTTGGTACCTTTATTGGAATCTGGTCAAATCTAGCAC TGCCCTTTATTGATTTTGCTATCTTTTGCTGGATAGTGCAGTATTTAACTGGAAAATTTGCAATTTTGAGGGTGAGGTTG GGGTTCTGGTTCTTTGGCAATTCATTGTAATTCTCTATTCTGTGTTTGTTTGCAAAGGTTAAGGTTTTGAATTGAGGTTG TTGTTTCTGAATTGGCTTCTTTCCTGTGGTTTAACTACTCCTTGGAGGAACTCAAGTTGAAGTTTCCCACTTCCCTTTCA CATTTGGGGGTTGAGTGTAAGAGTGTTGCTTTTCTTTCCTTCTTCCTTTCTTTTGATGGATTTCACATACTGTAGGTTTT GTGGACATTGATTATCAACTCTGTGTTTGTCTGCTCTGAGCTATAAAGGTTTAATATTTGAACTAGGGTTTTTGTTTCTG AATTGCCTTCTTTCCTGTGAATTAGCCCTTTGGAGGAATTTAAATTGAAGCTTCCTACTTCTATTTCCAATTTTTGTGGA TTGAGTGTTGCTTTCCTTTCAATCTTCCTTTTGTTTTTTGTCCTTCACAAATCTCAAATTTCTGTCTATTTTGGATCTGC TTAAGCTTAGGTTGTAGGGAAGTTTACTCAAGCTGTCTTTGGCTGTTTTGATACATACTTGAATTGCAACTTTTTAAGTT CTTCCAGGTTTTTCAACTGGTATTGAATCTAACTCCTGTCTTTGGGTGTTGGGTTTAACTTTTATTAATAATCATTAGTG GACTTAGTATATGCTTGGTTTAACTTTTGGATGACAATATAGTTGCTTGGGAGTCATTTCAGGGAATTGATTTCAGTCTC AAAATCAATTCTGGTAGAAGATAGAGACAGTAGCTTTTGCATTGAACACAATCAATTGTGAGATTTTACAACTGGATTTC ACGTTACCTTATAAAAATCATTTTTTTCAGAAAGGTAGCCAAGCATAAATCATTTCACTTTCAACTCACTTTTACCATAA TCAATTTTATCCAAAACCAATTGTGATAATGCTGATCCAAACATGTAGTCAGTCTGATCCTTTTCTGTACATAGTGTGAC TTGATTTTTTATACTTTGGCAGGTTTCAGGACTCTGATATCATGGAATCCCCACAATCTGTTGTGTCACCATTCAAGGGC TCTATTTTGGGTGATGGTGAGAAGTACAAGTCTGATGTTTTCCCAAGAAGCTCTAGTCACTTGTCTAAGGACTTTGAAGT CAATGGAAAGGAAGTTGTTGTGTCTAATCCAGAGGAATTCATTGGAGTAGTTGATGTTTACATACACCAGGCAAGGGACA TTCACAACATCTGCATATACCACAAGCAAGATGTGTATGCTAAGATTTGCTTGACAAGTAACCCTGAGAACACTGTATCT ACCAAGACTATAAATGGAGGAGGAAGAAACCCTGTGTTCAACGAGAATCTTCGCCTGAGCGTTAAGACCGTTGAGTCTTC TCTCAAGTGTGAGATTTGGATGCTGAGCAGGGTGAAGAATTATCTTGAAGACCAGTTGCTCGGTTTTGCCCTGGTGCCTT TGTCTGAAGTGCTGTTGAAGAAGGATGAAAAACTAGAGAAAGAGTTCTCTCTTTCTTCAACTGATCTGTTCCATACCCCA GCAGGTTTTGTTCAACTGTCCCTCGCTTATGCCGGTGCTTCGCCAGATGTCATGGCAATTTCTGCAATGCCTAGTGAATT GGACACAAATTGCACTGAGAAGGACTCTGAGTCACTGGCTAGAGATTTGGATAAAATTGAGTTCCCGGATCCGAAAATCG CGAATGAAGACCATATGATGGTTTCAGAATATATTGGAATTCCATGTGAGGAATCTCAGTGTTCTGATAGCTTGGCCACT ACTACTGATACTGAAAATTCTGAAGCTGGTGTTCAGCTTGTGGAAAGGTTCTCAGCATGCAGTGTTGAGTCTAACGGAGT TTCGTCTCCTTCGATGGCTGCAAGCTCAGACTCATCCGATGCTGCTACTGTTACTAATGCTGCTGCTACTGCTAAATCTC CTAATCAGGAACAAATTTCCGGTACCAAAGAGAAAAGTGTTGTGGATGTGAAAGATGGTGGTGAGAGTGATTCATCAAAT GGGGTGGTGAATAATGAGTCATTCCCAAAGCCTGTTGTGAGTGTGAACATTGAACCAGAGCCAACGATGGTGCAGCAGGA TATAGTAGATATGTACATGAAGAGCATGCAGCAGTTTACTGAGTCATTAGCAAAAATGAAGCTTCCTATGGACTTTGAAA GTGGACCAACTAGTTCAGGAAACTCAAGTTCTGAACAACAGAAACTGCAAGCTTCAAAGAGCAGTAACTCCCGTGTGTTT TATGGCAGCAGAGCTTTCTTCTGACTTAGATTTTAGAACAAAAAACTGATATCACTTGTGAAATCAAATAATGTGTTGTC TAGTGTGGTCCTGTGCATGTTTGGAAATTCTCCCCCAATTGATTTCTGAGCCAGATTCAATTCAGTGGAGAAGTTTATGA GATTGAGTAGCTTCTGAATTTCAGAATTCATTTTGTGAGAAGAGAAGTTGATCCAAACATGTTATATGTGTACTTCTTGA TAGGGAATCTTAACTTTGTACTCTCACAGGCTTGGTCCTATGTTAACTGCTACATGAACTTTTTCTGTCTTATTCTTGTG TTTCTTTTTGTTTTGAAAGTCAATAATTGCGATATCAGATTTCATCTAACAAAAGGTTCATGTTGGGTATGATCCCTAGT GATAATGTGGTCCCACATTCACATGGCCAATGTTAAAGTTGATTGGGACCAAATCATCCATGATTTCACTTTCTTCTATA TCACATGGACAAAGAGTACACTGCAGAATCGTGGATTTTATTTTAATTTTTCATTGTATATATCTATATCCTCATTTGGG C
CDS sequence (LotjaGi1g1v0021300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAATCCCCACAATCTGTTGTGTCACCATTCAAGGGCTCTATTTTGGGTGATGGTGAGAAGTACAAGTCTGATGTTTT CCCAAGAAGCTCTAGTCACTTGTCTAAGGACTTTGAAGTCAATGGAAAGGAAGTTGTTGTGTCTAATCCAGAGGAATTCA TTGGAGTAGTTGATGTTTACATACACCAGGCAAGGGACATTCACAACATCTGCATATACCACAAGCAAGATGTGTATGCT AAGATTTGCTTGACAAGTAACCCTGAGAACACTGTATCTACCAAGACTATAAATGGAGGAGGAAGAAACCCTGTGTTCAA CGAGAATCTTCGCCTGAGCGTTAAGACCGTTGAGTCTTCTCTCAAGTGTGAGATTTGGATGCTGAGCAGGGTGAAGAATT ATCTTGAAGACCAGTTGCTCGGTTTTGCCCTGGTGCCTTTGTCTGAAGTGCTGTTGAAGAAGGATGAAAAACTAGAGAAA GAGTTCTCTCTTTCTTCAACTGATCTGTTCCATACCCCAGCAGGTTTTGTTCAACTGTCCCTCGCTTATGCCGGTGCTTC GCCAGATGTCATGGCAATTTCTGCAATGCCTAGTGAATTGGACACAAATTGCACTGAGAAGGACTCTGAGTCACTGGCTA GAGATTTGGATAAAATTGAGTTCCCGGATCCGAAAATCGCGAATGAAGACCATATGATGGTTTCAGAATATATTGGAATT CCATGTGAGGAATCTCAGTGTTCTGATAGCTTGGCCACTACTACTGATACTGAAAATTCTGAAGCTGGTGTTCAGCTTGT GGAAAGGTTCTCAGCATGCAGTGTTGAGTCTAACGGAGTTTCGTCTCCTTCGATGGCTGCAAGCTCAGACTCATCCGATG CTGCTACTGTTACTAATGCTGCTGCTACTGCTAAATCTCCTAATCAGGAACAAATTTCCGGTACCAAAGAGAAAAGTGTT GTGGATGTGAAAGATGGTGGTGAGAGTGATTCATCAAATGGGGTGGTGAATAATGAGTCATTCCCAAAGCCTGTTGTGAG TGTGAACATTGAACCAGAGCCAACGATGGTGCAGCAGGATATAGTAGATATGTACATGAAGAGCATGCAGCAGTTTACTG AGTCATTAGCAAAAATGAAGCTTCCTATGGACTTTGAAAGTGGACCAACTAGTTCAGGAAACTCAAGTTCTGAACAACAG AAACTGCAAGCTTCAAAGAGCAGTAACTCCCGTGTGTTTTATGGCAGCAGAGCTTTCTTCTGA
Protein sequence (LotjaGi1g1v0021300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MESPQSVVSPFKGSILGDGEKYKSDVFPRSSSHLSKDFEVNGKEVVVSNPEEFIGVVDVYIHQARDIHNICIYHKQDVYA KICLTSNPENTVSTKTINGGGRNPVFNENLRLSVKTVESSLKCEIWMLSRVKNYLEDQLLGFALVPLSEVLLKKDEKLEK EFSLSSTDLFHTPAGFVQLSLAYAGASPDVMAISAMPSELDTNCTEKDSESLARDLDKIEFPDPKIANEDHMMVSEYIGI PCEESQCSDSLATTTDTENSEAGVQLVERFSACSVESNGVSSPSMAASSDSSDAATVTNAAATAKSPNQEQISGTKEKSV VDVKDGGESDSSNGVVNNESFPKPVVSVNIEPEPTMVQQDIVDMYMKSMQQFTESLAKMKLPMDFESGPTSSGNSSSEQQ KLQASKSSNSRVFYGSRAFF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 420 | 420 | 2.0E-217 | – | |
| PANTHER | 1 | 420 | 420 | 2.0E-217 | – | |
| Gene3D | 51 | 208 | 158 | 4.2E-15 | ||
| SUPERFAMILY | 55 | 185 | 131 | 2.96E-18 | – | |
| SMART | 56 | 159 | 104 | 6.7E-6 | ||
| Pfam | 56 | 163 | 108 | 6.3E-11 | ||
| CDD | 57 | 164 | 108 | 1.54194E-10 | – | |
| MobiDBLite | 298 | 341 | 44 | - | – | |
| MobiDBLite | 298 | 316 | 19 | - | – | |
| MobiDBLite | 383 | 409 | 27 | - | – | |
| MobiDBLite | 387 | 409 | 23 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0021300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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