Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0021600 |
| Transcript ID | LotjaGi1g1v0021600.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Tubulin-specific chaperone A; TAIR: AT2G30410.1 tubulin folding cofactor A (KIESEL); Swiss-Prot: sp|O04350|TBCA_ARATH Tubulin-folding cofactor A; TrEMBL-Plants: tr|I3T2X7|I3T2X7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0021600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:2664937..2672575) extracted from Lotus japonicus Gifu genome v1.2.
AATAGAGATAATCCATTTGTGCAAGCAAAGAAATTAGAGTTTGAAAAGCCCAAAACCCAAAAGAAAGAGGAAAAAGGGAC CTTAAACGGTGCGTTTCAGTGAGAGTAAAGGTCAAGGTCGTTTTCAATCTTGATCCTTCATCGTCTTCTACCTGTTGCTA GGGCACGATCAGCACTCTGCAAACACAAGGTCAGATTTCACATCATCCTTCATCGCCACCACCATTTTCCTCTTCCTTCA GCAATTTGAGCGTTGATTTTGAATTCAGCTTCACATTGCGTGTTTTTTTGATTGATTTTGATCTTGAATCAAATTTTACA TGATTGGAATTTGGAAAATGATATTTTTTTTCTGTATTGTTAATGTTTTTCGTTTCTTGTTTCTGGGTATAGAGAGAGAG AGAGAGAGAGAGAGAGAGAGAGAGAGATTCAATGGCTACTGTGAGAAGCCTGAAGATCAAGACAAGCACATGCAAACGCA TTGTGAAGGAGCTGCATTCTTATGAGAAGGAAGTTGAAAGCGAAGCTGCGAAAACCGCTGACATGAAGAACAGAGGAGCT GACCCTTATGATCTCAAACAGCAGGTATATATACCTCAACTCAGCTCAACATGTGCTTACTACTAGATGTATAATAGTTG TTGGATTAGGATCCTCTCAAGGGAATTGACAATGTCAATTGTAACGTTGTGTTTATCTCGCTTCATAAATATTCGAAGAA TTCACCTATTTGATACATGTAAAGACGAAAGAGAGAGACAGACAAAAATTTGCAACTTGAGGGAGTTTACAATTGAGAGG ATTCTGATCTATAATCACTTTTTGGAAGAAGCTAAAGTGTATCTTTTAGAGTTACTGTGTTTTGGATTGTGTTCCGCCAC TAATAGAAACACATTATAAATTGAAGTTGTTAATGCGTTGGAATATTGTGTTTTGATTAGCTTGTAGTCATTAAATTCTT TGAGTAGTAGCGTGTTTGGTTTTGCGGTTAGAAGTCTTGCAATCATTGCTAGAGAGAAGCTGCAAAGTGTAACTTCTAGA GGTACCCTTATTTGCGTTTTGTGGCATGGCCAATTCAAACATGCTACGAGTTTGCGTGAACTTCTCAACAAGCATTTGTA GAGAAAGGGAAGTCTAGCTTCGGCTGCTCATCTTTTCAGAAGCCCCCTCATCTAACTTCCCCATAAGCATCACTTTTTCG TAAGATAGGAATAAAATACTTCTCAATTGAAAGATTTTATAAACTAAAAGCTAATGCAAACTCAGTCTTGCTGAGAAAGA GAAAAAACATAAGCTCTTCTCCTAAAAAATTGTCTAATCCAACCATGCAAAGATGGATCTTTCACTATATTATTTGTGCA GAATCCAAGGCACATTTACTCATAAGCTAAGACTTTTAGCTTCTAACCATAAGTGGATCTAAAGTATTTCACGGTGGAAC CAAACATGCTATTAGTAAGGCTTTATGTGCACCTGCAATTGCGTTTTTTAATTTGGAAATATCACTGTGGTAAGTGATGG TAGGGTTGTTTGACAATTGTCTGTCATTTCCTTTACTTTGTAAAATGATGGTTATAACTTGTGTTCTTGACCTGATCTGA ACAGGAAAATGTGCTGGCTGAGTCTAGGATGATGATTCCTGACTGCCGCAAGCGCCTGGAGGTCGCTTTGGAAGACTTGA AAGGAATATTGGTACTGTATATCTCTTGTTTATGTGTTCACTGTATAGCGCAGTTTTCTGCTGTGTTTTCATGTCATGAA CATTTTTCACCACTCTGAGGTGCTCACCATTTGATGCCTTGGCTTTTTCATAGAATAACTTAGCTGATTATTCTCTTGAT TGGTCTATTTGAGGATAGTAGCTGTTAATGATCTTGTGTATTTTGAGCAAGAAATTGGGGTAGGAATATGGTTATCCTGA CCTCTCTAGTTCAAGGTTTGGGCAAACTTAGTGTCTTACAGCTTTACTCTACTCTGGGACAAGGTAGTCCGTCTTGAGCC AATCTGAGCTACATTTTCTCAATATGATTTCTGAAAGTTCCTGCATTTCACTGTGAAGCATTTTAAGGGTCTAACACAAG ATTTTTTTTTTGATTTCTTAGATCATTTTTCCGAAAGAAAGGGGGGGGGGGAAAGGAATGGGAAAGTGAAAGCTAAAGAG AAGAGACATTTATGTTCTACTTTAATATGTTAATTTTGGTATTTGGTATAATTTGGCTGTGCAACTTTTTGTTCTCATGT ATCAGTTAATCGTGTGAAGCAAGTTCTTTAAACAAACCAATTAATTTTCATTTATGCAAAAAAATGTTATTTATCCCCTT ATATTTTGCTCCATATCTTTACTGAGGCATTTCTCTTATTTAATTTGCTTGAAGTTGGATCTGTAGATTTAATTTTATGT GGAGTAATTCTTTTCCGCTTTCAGGCTGAAATGGAGGAGTCAGATGAGAAGGAATGTCCTGAAGTTGATGAAGCTAAAAC CACCCTCTCAGAAGTTGAAAAAGTACTTGAAACAATAGAAGTTTAGCAAGGTGGTTTGCTTAGTGCTTTTGACAGAGGAT TTTGTGCCTGTATTATATAGCTTCTTGGTCACAAACAATATATACATTCTTCTTTTTGTGTGCGCCCTCTCCTACTCTAG TCTCTCAAATACAGATTCATGCTGAAAGGTTATGCAACTTCCTTGACAAGATTTAATCTTGTCTAGTTATATGCTCCTGT AGAACATCTGAAAATGAATGAATGTGATGACATCGATTTACTTTACTAAGCTGATAATATGGTGTCATTTTCTGAAAGTT TATACATCCAGGTTTTTCTAATTTTATGTGGCCTGTTATCCAAATATCATTCAGTAATTATTTTGGCAGCATCATGTGCT AAAATTTAATACAAAGAGTTTCATTCACTTTTTTCTATATTGAAGTGCATGTTATTATCCATCTACAATCCAAATCATCA GGTTTCTCATTGAGTCTTTCTGGTCTACCGTTAGAAAGTATGAAACCTAGAGAATAACATATCCTGATGTTTAGTTGATA TTGATAGGATCATCCTAATTATAGATTGTTATATTTGTCAAATTCGTGGATTCCAAATGTACCTTATAACTAAAAAAGGG ACTGGAGTATTTATTTTTCCTTGCATTGCATCTTCCCAAAATAAAGAACAAATATGAAATCAAATAAACAAAATTAAAAA TCAAGACTAACAGCACTCTCAGACTTCCAGTGTCTTGCTTTCTCAAATCCATTGGTATAGTTCTCAAAATCATCTATGGT TTGGTCAATCTCTTCTTGAGTGTTCATCACAAAGGGTCCAAATTGCACCACAGGTTCACCCAATGGTTCACCTCCAACCA AAATGAACCTTAGTGCCTTAGAAGATTTGTTCCATGCCTCTAGGCCATCCCCAGAACCAAGAAGAAGAATGTGGTGAGGT GTTGTAGGCTGAGATTTTGAGTTTCCAAATACACCCTCTCCTTCTAAGATGTACACAAAAGCATTCCAAGATTTTGGTAT GAGTTGTTGCAAGTGTGCACCAGGTTTAAGAGTAAAGTCCAAGTACATGGTTGGTGTCCTTGTGTAGATTGGAGACTTAA TTCCAAGAGCTTCCCCTGCAATCACTCTTACCTTGATTCCATCTTTCACAGCTTCTGCTATGTCCTTGCTCAACATTTCT TGATATCTTGGTTCAATCCTGAGATAACAGTACAAGACAGATTAAACCAAAGTTCAACTATCAAATTAATAGCATGTTTG GTTCCACAGTGATCAAATACTTTAGAATCAATTTTGGTCAAAAACTATAATAGCATGTTTTGTTTGATTCTGAAATACTT TATAATCACTTTTAGTTAGAAATTACAAGTCTTAGCGTCCATGTAAATGTCTTGAATTCTGTGTAAATTGTGAAATCAAA CATGTACTAAGTTTTAACTTATGAGTAAACCTGCATTGGATTTTTTGTTAACTGGGAAACAAAATATGCACAGATAAACT ATTTTACCAACTTGAGGTAAGCTTCAAGGTAGATAATTATGATTTCTCAAAGAATAACAAGTACTTCCAAGAAGACACTG ATTAATATTGAAAAAGTTTAATCCTTTTATGAAGGATTGAAGGGTCACTGAGAACCAGACAATTTTTGAAACTAGCACAT ATTGCTCTTCAAAGGGTGAGAGGCACATTCTTTATGCTGGCCATTTCAGGCCCTTTTGCATTTTGGTGCTCTATTCAAAA GCACTTATAGGAAATGGTACATGATGGGGAATCATGAAATAAAGTCACATGTGAAAGTGAGGAAAGCAATAAGGCATATA TTAACTCAGAAAAGTTTAGAATATATTTGACTTTTTTTTTTGTAAAGAGTAGAATTCCCTTTTGTCCCTCCTTGATATCT GGTGGTGTGCATTATCCAAAACGATTCTCCAAATATTAATGATGATCTTCAGTGATGCATAAGATACGTCATCTAATGTG AGGTCAGGCTAAGGTGTGATTTGAGTATTTCACCAAAAAAAAAAAATCTTCCTAGTTCCTATTGGTTACTCTTTATGTGA TTTAATAGTAAATTTTTATAATGTTACATTAAGATCAACTAGGGCAAGATTCAATGCTCATTTGATTAAGAAAAGGCTGC ATCCGCAAACAGAGAATGATCAATTTCAGCTGGGGGTATCCCACCAAACCTGATTTTGATACTTACAAGCTAGGGAGGAG AGGATATGCGCATTAAACTTAAAAAACTAGGGCAAGATTTGTAGAAAAGGTATGAAAAATGTTTGTAAATTATTCAATTG ATTGTAAAGTTAAATTATTTGAGAACCGGAATCAATTTTAGGAAAAAGTAAGTAGGTTTTTAGTTTCATAATTGATTTTG GTGAAAGATAAATTGATATAAACATGCTATGAATAGTTTTTGTGAGTCAAAGTTGATTCTAGAAAAAGAGAAAGTAATTC AAACATGTTATTTGTCCACGCACATTTTATGTTGGGAAATAAGGTATGCATGTGTTTGGTTACAATGGCAGGTTTAGAAT TAATTTTCATGGATCATAATTACTTTTCAGTGGTTATATACATATTTAACAATTGACTTAGAGTTCGAGGGTAGCGACAT AGAGGCTATCCGTGGTTTGGAGAAGGTTTATGAGGATCATTTTAAGACTTGAGTCGCGCTTGTATATCCTGGTTGTGTCT TTGAAAGAGTTAGGATGTTCTTTGTGGCCTATGCTCTTGTTTTTTGCCCGTTTAGTTCCTGTTCGGTTTAGCGGGCTTCT TTTTGTTCGTCGAAGTGCCTTGTTATTAGTGGGTGATCTTCGCCCCCTGAGGGTCCTGTCCTTAGGGGTTTTTTGTGATA ATCTATTTATATACCTTTACCTTTCAAAAAAAAAACAATTGACTTAGAGAATTTAATTTTAATTTTAAAATAAATTCTAA GAAGAAGTAAGAGAATGTAGTTTTTACTGTAGACTTAATCAATCGTTTATAACTTTATTCTATAACAATGTCCTATAAAA ACCGGTCTCCTCGCAAATGAATATAAATATAAGTCACATCACTTTCAACTCATTTTTATTATGATTAATTATATCCAAAA GCAATTTTGACAATGCTGATCAAATATGCAATAGTTCACATACATTTTATGCTGGGCAGCAAGGTTAATCCAGAGCTGTA GACCCTTTTGGGTTCCTTGAGCAGAAGGAGCAGACATTTCTGAGTGAACTATCCCTCTCCCTGCAGTCATCCACTGCAAG TCACCGGCTTCGATTGTTCCCTTATGTCCTTCAAAGTCTTCATGTGTTACAGCTCCCTGAATTGCACAAAAAAATTGCAC TTATGAGTGGTTAGCACAAAAACAAACATATGTGAATGTGACCAACAATATAGCACACATACAACTTTAGGCACACTCAA GGTAGTAGTTGGCCTTCTAGAAAGAAATGAACAAGACATTAAAATGTGGGGTCACTCTTGTCTTTATGCTCACATCGACA ATCAAAACATTCTTATGATTTCCTTTTGGAGGCACTAGTACAATAGTGGCTCATTTTGGTTGAGAATCATTAAGTTGTGA CTTATATGTTGCCACACCACCAGCACACAGATTTAACACCATATTGACCTGATATTTAGCTCAACTAACAAACTTTAAGC TTTTTTCCCTAATACATTTATGTTTTATAGAGAAAATCGTTCGAAATGCCCAAATTCTTGTGGAGATAATTCTTACTGTT GAAATTTTTTCCATACACATGATTCAAATCCGAAATCTTACTTACAAAAATTAAACATATACCATTTGAGTCAATTACCG ATATAATTAGTAACTTTAAGCTAACATAAAATATAAACTTAAAATAAGATAAACCAAATATTTTGTTGACATCAAATTTT AGTCTTGCAATTATATTAATTTATTTAGTCCTATGATGGCCAACTATTATATATTTTTCAGTTGTACCTTTGACTTTCTT ACAAGGATTGCCACAAAATAATGAGATAACTTATAAAAAGGTTTATCAATTATCATATGTTTCTAAATAGTTTATAATCA ATGAGAAAGGGAGAGCTAGTCAATTAACTGGAAAAAGAATAATCTGTACCTGTAACATGTATGTGACCGTCTCAAAGCCT GTAATCAGAAAAGAAGGAACATGGAGTTAGAAACTCAGATTACTGAAGAACAAATGTAATAACATATTTCGTTCCAAGGT GAAATGTGCCCGAATCACTTCAAGTTAGAAGTTATAAGCCTTAACTTATGATTAAACGTGTATTGTATCCTGTGCAAATT ATGAAAACAAACATGCATTAATAGTGTGTTTGAATCGCGACTTTTTTTTCCGGAATCAATAATGTCATTCAGAAGCTAAT CACATAAGTTTTTCCTGTAATTTATTTTGGCATCGAAACTAATGAATTTCCAAACATGTGCTAAATGATACAGAAAGTGC AGTTGGCAAACCTCTATGTGGATGATCAGGAAACCCAGCAGGAGCAGCCACTGCAACATTTCAGAATTACTAATTGTTAG AAAACAAAATAAAACTGACCATCATTTTTCTTTTTATTCAAAGTTGAAAAACAGAGCAAAAAACAGAGATTCCCCCACCT GAGAATTCATCCAAGACAAGGAAAGGATCGAAGTACTTGAGCTCAAATCTGACCAAAACCCAGATAAACCAATCAATTCA AAAGTTCAATTCCAAAACTTCCATCCAATGCAATAACATATCATCAATACAAAATTGAATGATCAATATATTAGCATGTC ACACTTCTAAAAAGTTAGAACATGATCAATCAATATATACAAGGCTAGAAGAAGAAAAATTGGCCATTCTCTCATACCTT CCTATGCTTCTTCTAACAACAGCACCAACACCTTCATGTTGAGGTCTTGCCAGGAACTTTCTGGAAACAGTACGAGGTTC TTTAAGGTATTGGTCTGGCATTTTGCAGAATATTGGTGAGAAAGGAAAAAAAGTTTGTAGTTTGTATTTTGATGAAAATG TGAGTAGCAAGAGAAGGGTGGTTTAAAGTATATATAGGAAGGTGAGGTGTGGCATGAGAGAGAGAGAGAGGGAGAGGTGG AATTTCACTCTTGGAAGGTCAAACTAAACAAGAGTTTGC
CDS sequence (LotjaGi1g1v0021600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTACTGTGAGAAGCCTGAAGATCAAGACAAGCACATGCAAACGCATTGTGAAGGAGCTGCATTCTTATGAGAAGGA AGTTGAAAGCGAAGCTGCGAAAACCGCTGACATGAAGAACAGAGGAGCTGACCCTTATGATCTCAAACAGCAGGAAAATG TGCTGGCTGAGTCTAGGATGATGATTCCTGACTGCCGCAAGCGCCTGGAGGTCGCTTTGGAAGACTTGAAAGGAATATTG GCTGAAATGGAGGAGTCAGATGAGAAGGAATGTCCTGAAGTTGATGAAGCTAAAACCACCCTCTCAGAAGTTGAAAAAGT ACTTGAAACAATAGAAGTTTAG
Protein sequence (LotjaGi1g1v0021600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MATVRSLKIKTSTCKRIVKELHSYEKEVESEAAKTADMKNRGADPYDLKQQENVLAESRMMIPDCRKRLEVALEDLKGIL AEMEESDEKECPEVDEAKTTLSEVEKVLETIEV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 113 | 113 | 1.9E-44 | – | |
| PANTHER | 1 | 112 | 112 | 2.2E-52 | ||
| SUPERFAMILY | 3 | 104 | 102 | 4.97E-30 | ||
| Pfam | 7 | 90 | 84 | 1.1E-28 | ||
| Coils | 66 | 89 | 24 | - | – | |
| Coils | 94 | 113 | 20 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Tubulin complex assembly | The aggregation and bonding together of alpha- and beta-tubulin to form a tubulin heterodimer. | ||
| Biological process | Post-chaperonin tubulin folding pathway | Completion of folding of alpha- and beta-tubulin; takes place subsequent to chaperonin-mediated partial folding; mediated by a complex of folding cofactors. | ||
| Molecular function | Beta-tubulin binding | Interacting selectively and non-covalently with the microtubule constituent protein beta-tubulin. |
Expression pattern of LotjaGi1g1v0021600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…