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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0021600 |
| Transcript ID | LotjaGi1g1v0021600.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Tubulin-specific chaperone A; TAIR: AT2G30410.1 tubulin folding cofactor A (KIESEL); Swiss-Prot: sp|O04350|TBCA_ARATH Tubulin-folding cofactor A; TrEMBL-Plants: tr|I3T2X7|I3T2X7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0021600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:2664939..2668634) extracted from Lotus japonicus Gifu genome v1.2.
TAGAGATAATCCATTTGTGCAAGCAAAGAAATTAGAGTTTGAAAAGCCCAAAACCCAAAAGAAAGAGGAAAAAGGGACCT TAAACGGTGCGTTTCAGTGAGAGTAAAGGTCAAGGTCGTTTTCAATCTTGATCCTTCATCGTCTTCTACCTGTTGCTAGG GCACGATCAGCACTCTGCAAACACAAGGTCAGATTTCACATCATCCTTCATCGCCACCACCATTTTCCTCTTCCTTCAGC AATTTGAGCGTTGATTTTGAATTCAGCTTCACATTGCGTGTTTTTTTGATTGATTTTGATCTTGAATCAAATTTTACATG ATTGGAATTTGGAAAATGATATTTTTTTTCTGTATTGTTAATGTTTTTCGTTTCTTGTTTCTGGGTATAGAGAGAGAGAG AGAGAGAGAGAGAGAGAGAGAGAGATTCAATGGCTACTGTGAGAAGCCTGAAGATCAAGACAAGCACATGCAAACGCATT GTGAAGGAGCTGCATTCTTATGAGAAGGAAGTTGAAAGCGAAGCTGCGAAAACCGCTGACATGAAGAACAGAGGAGCTGA CCCTTATGATCTCAAACAGCAGGTATATATACCTCAACTCAGCTCAACATGTGCTTACTACTAGATGTATAATAGTTGTT GGATTAGGATCCTCTCAAGGGAATTGACAATGTCAATTGTAACGTTGTGTTTATCTCGCTTCATAAATATTCGAAGAATT CACCTATTTGATACATGTAAAGACGAAAGAGAGAGACAGACAAAAATTTGCAACTTGAGGGAGTTTACAATTGAGAGGAT TCTGATCTATAATCACTTTTTGGAAGAAGCTAAAGTGTATCTTTTAGAGTTACTGTGTTTTGGATTGTGTTCCGCCACTA ATAGAAACACATTATAAATTGAAGTTGTTAATGCGTTGGAATATTGTGTTTTGATTAGCTTGTAGTCATTAAATTCTTTG AGTAGTAGCGTGTTTGGTTTTGCGGTTAGAAGTCTTGCAATCATTGCTAGAGAGAAGCTGCAAAGTGTAACTTCTAGAGG TACCCTTATTTGCGTTTTGTGGCATGGCCAATTCAAACATGCTACGAGTTTGCGTGAACTTCTCAACAAGCATTTGTAGA GAAAGGGAAGTCTAGCTTCGGCTGCTCATCTTTTCAGAAGCCCCCTCATCTAACTTCCCCATAAGCATCACTTTTTCGTA AGATAGGAATAAAATACTTCTCAATTGAAAGATTTTATAAACTAAAAGCTAATGCAAACTCAGTCTTGCTGAGAAAGAGA AAAAACATAAGCTCTTCTCCTAAAAAATTGTCTAATCCAACCATGCAAAGATGGATCTTTCACTATATTATTTGTGCAGA ATCCAAGGCACATTTACTCATAAGCTAAGACTTTTAGCTTCTAACCATAAGTGGATCTAAAGTATTTCACGGTGGAACCA AACATGCTATTAGTAAGGCTTTATGTGCACCTGCAATTGCGTTTTTTAATTTGGAAATATCACTGTGGTAAGTGATGGTA GGGTTGTTTGACAATTGTCTGTCATTTCCTTTACTTTGTAAAATGATGGTTATAACTTGTGTTCTTGACCTGATCTGAAC AGGAAAATGTGCTGGCTGAGTCTAGGATGATGATTCCTGACTGCCGCAAGCGCCTGGAGGTCGCTTTGGAAGACTTGAAA GGAATATTGGTACTGTATATCTCTTGTTTATGTGTTCACTGTATAGCGCAGTTTTCTGCTGTGTTTTCATGTCATGAACA TTTTTCACCACTCTGAGGTGCTCACCATTTGATGCCTTGGCTTTTTCATAGAATAACTTAGCTGATTATTCTCTTGATTG GTCTATTTGAGGATAGTAGCTGTTAATGATCTTGTGTATTTTGAGCAAGAAATTGGGGTAGGAATATGGTTATCCTGACC TCTCTAGTTCAAGGTTTGGGCAAACTTAGTGTCTTACAGCTTTACTCTACTCTGGGACAAGGTAGTCCGTCTTGAGCCAA TCTGAGCTACATTTTCTCAATATGATTTCTGAAAGTTCCTGCATTTCACTGTGAAGCATTTTAAGGGTCTAACACAAGAT TTTTTTTTTGATTTCTTAGATCATTTTTCCGAAAGAAAGGGGGGGGGGGAAAGGAATGGGAAAGTGAAAGCTAAAGAGAA GAGACATTTATGTTCTACTTTAATATGTTAATTTTGGTATTTGGTATAATTTGGCTGTGCAACTTTTTGTTCTCATGTAT CAGTTAATCGTGTGAAGCAAGTTCTTTAAACAAACCAATTAATTTTCATTTATGCAAAAAAATGTTATTTATCCCCTTAT ATTTTGCTCCATATCTTTACTGAGGCATTTCTCTTATTTAATTTGCTTGAAGTTGGATCTGTAGATTTAATTTTATGTGG AGTAATTCTTTTCCGCTTTCAGGCTGAAATGGAGGAGTCAGATGAGAAGGAATGTCCTGAAGTTGATGAAGCTAAAACCA CCCTCTCAGAAGTTGAAAAAGTACTTGAAACAATAGAAGTTTAGCAAGGTGGTTTGCTTAGTGCTTTTGACAGAGGATTT TGTGCCTGTATTATATAGCTTCTTGGTCACAAACAATATATACATTCTTCTTTTTGTGTGCGCCCTCTCCTACTCTAGTC TCTCAAATACAGATTCATGCTGAAAGGTTATGCAACTTCCTTGACAAGATTTAATCTTGTCTAGTTATATGCTCCTGTAG AACATCTGAAAATGAATGAATGTGATGACATCGATTTACTTTACTAAGCTGATAATATGGTGTCATTTTCTGAAAGTTTA TACATCCAGGTTTTTCTAATTTTATGTGGCCTGTTATCCAAATATCATTCAGTAATTATTTTGGCAGCATCATGTGCTAA AATTTAATACAAAGAGTTTCATTCACTTTTTTCTATATTGAAGTGCATGTTATTATCCATCTACAATCCAAATCATCAGG TTTCTCATTGAGTCTTTCTGGTCTACCGTTAGAAAGTATGAAACCTAGAGAATAACATATCCTGATGTTTAGTTGATATT GATAGGATCATCCTAATTATAGATTGTTATATTTGTCAAATTCGTGGATTCCAAATGTACCTTATAACTAAAAAAGGGAC TGGAGTATTTATTTTTCCTTGCATTGCATCTTCCCAAAATAAAGAACAAATATGAAATCAAATAAACAAAATTAAAAATC AAGACTAACAGCACTCTCAGACTTCCAGTGTCTTGCTTTCTCAAATCCATTGGTATAGTTCTCAAAATCATCTATGGTTT GGTCAATCTCTTCTTGAGTGTTCATCACAAAGGGTCCAAATTGCACCACAGGTTCACCCAATGGTTCACCTCCAACCAAA ATGAACCTTAGTGCCTTAGAAGATTTGTTCCATGCCTCTAGGCCATCCCCAGAACCAAGAAGAAGAATGTGGTGAGGTGT TGTAGGCTGAGATTTTGAGTTTCCAAATACACCCTCTCCTTCTAAGATGTACACAAAAGCATTCCAAGATTTTGGTATGA GTTGTTGCAAGTGTGCACCAGGTTTAAGAGTAAAGTCCAAGTACATGGTTGGTGTCCTTGTGTAGATTGGAGACTTAATT CCAAGAGCTTCCCCTGCAATCACTCTTACCTTGATTCCATCTTTCACAGCTTCTGCTATGTCCTTGCTCAACATTTCTTG ATATCTTGGTTCAATC
CDS sequence (LotjaGi1g1v0021600.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTACTGTGAGAAGCCTGAAGATCAAGACAAGCACATGCAAACGCATTGTGAAGGAGCTGCATTCTTATGAGAAGGA AGTTGAAAGCGAAGCTGCGAAAACCGCTGACATGAAGAACAGAGGAGCTGACCCTTATGATCTCAAACAGCAGGAAAATG TGCTGGCTGAGTCTAGGATGATGATTCCTGACTGCCGCAAGCGCCTGGAGGTCGCTTTGGAAGACTTGAAAGGAATATTG GCTGAAATGGAGGAGTCAGATGAGAAGGAATGTCCTGAAGTTGATGAAGCTAAAACCACCCTCTCAGAAGTTGAAAAAGT ACTTGAAACAATAGAAGTTTAG
Protein sequence (LotjaGi1g1v0021600.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MATVRSLKIKTSTCKRIVKELHSYEKEVESEAAKTADMKNRGADPYDLKQQENVLAESRMMIPDCRKRLEVALEDLKGIL AEMEESDEKECPEVDEAKTTLSEVEKVLETIEV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 113 | 113 | 1.9E-44 | – | |
| PANTHER | 1 | 112 | 112 | 2.2E-52 | ||
| SUPERFAMILY | 3 | 104 | 102 | 4.97E-30 | ||
| Pfam | 7 | 90 | 84 | 1.1E-28 | ||
| Coils | 66 | 89 | 24 | - | – | |
| Coils | 94 | 113 | 20 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Tubulin complex assembly | The aggregation and bonding together of alpha- and beta-tubulin to form a tubulin heterodimer. | ||
| Biological process | Post-chaperonin tubulin folding pathway | Completion of folding of alpha- and beta-tubulin; takes place subsequent to chaperonin-mediated partial folding; mediated by a complex of folding cofactors. | ||
| Molecular function | Beta-tubulin binding | Interacting selectively and non-covalently with the microtubule constituent protein beta-tubulin. |
Expression pattern of LotjaGi1g1v0021600.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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