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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0023500 |
| Transcript ID | LotjaGi1g1v0023500.2 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Carboxyl methyltransferase; TAIR: AT5G55250.1 IAA carboxylmethyltransferase 1; Swiss-Prot: sp|Q9FLN8|IAMT1_ARATH Indole-3-acetate O-methyltransferase 1; TrEMBL-Plants: tr|A0A072UXX4|A0A072UXX4_MEDTR Indole-3-acetate O-methyltransferase-like protein; Found in the gene: LotjaGi1g1v0023500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:2838063..2840670) extracted from Lotus japonicus Gifu genome v1.2.
ATTCTGGCTCCGATGGGAGACAATGTTGTTGTGTCCAAAATGGAACTTGAGAGGTTGCTTAGCATGAAAGGAGGCAAAGG AGAAGCCAGCTATGCCAACAATTCCCAAGCTCAGGTACATTTAATTCTCATATACATATACATGTATATGTAGCATCCCT CTTAAGTCTTAACAATTATCATCATGTTTTGGATATACGTTTAAAATTATCACTATCATCACTTTTCCTCCATCAAAAAA CTTTCTAGCAAGAATTTGATCCTCCCTAAGATATAATTACGGAAAGATTTCTATCATTCAAAATATGTTAAAAAATATTG TGAATGTTTGAGGTTTCTCTGAATCTTCGGTAAGAGAATCTAGACCAATTCCTAGTGATTCTTCTGAAACCACTTACTTT CTTTGACTTGAGAAATTAAAAGGTTTTCAAACACACAAAAAGTTATATATATATAGTTGTTACAATTTGCAAAACAAAAT AAGTTTAATATTCTAATATGGAGTATCTTGCTTAACAAAAAGATTACAAATTTAATGACCCATGACTTCTCACATACATG CAGGCCATACATGCCAAATCAATGCTTCACCTTCTGAAAGAAACCCTAGATAGAGTTAAGCTTGGAGATGCTGATACACC ATTTGTGGTGGTGGACCTGGGTTGTTCATGCGGAAGCAACACCATCAAAGTGGTGGATGTGATCATCAAGCACATCATCA AGCGCTATGAGTCTTTAGGGTGCTTTGACCTACCTGAGTTTTCTGCTTTCTTCTCTGACCTTCCCAGCAATGACTTCAAC ACTCTCTTTCAGCTCCTTCCTCCTCTTGCCAACTACGGTGTTAGCATGGAAGAGTGCCTCGCTGCCAACAACCACCGCTC CTACTTTGCTGCCGGAGTTCCTGGCTCTTTCTACCGGAGGCTTTTCCCGGCCAAGTCCATTGATGTTTTCCACTCAGCCT TTTCTTTGCACTGGCTATCTCAGGTATACCTATACCTCTGTGTCTTGTTATTTTGTTCAAAGTATTGCTTACTTTTTTCT TTTCAACAAGGCTTCAGTACTAAATGTTATTGTTAGCAGTAAAATATCGTTTCCCAATTTTTATATTAATACATTAGTCA CAACTCTATTGAATCATATATGCTTATAAGGATACCAAAATTCTCAAATTTTTCATTGAAAGAATGCTCTTTCATTTTTT AAGAAAAGAAAAATAGTTAGATAGATATATATCTTCTTTTTTCCTAAGCAATTTTTGTTTTAACTTTACTTGCCAGCTCT GTTGGTTAAACTATTACACAATATTCTAATAATTTTGAATCATTCTATGACTTAAGCTTTCAGTTTTCAGTTTATCTTAC TTTTGCCCGTGATCTTTATAGCGATCACCTTAATTCCTTGAAAATGTTTGAACTTTTAGTGAATTATCACAATTAATTTG ATGAATATCTTTTAAGGGATTTCTCCTTAATTTGTATGACTTTCTTATATGCTTTTACTTTCAATTAACCAAACACTCGA AAGATTCTATATGCATGCAGTCTCTGTTGTACATATGCTGTAGTTTCCACGACAAAATCTAAAAGGGACATTTTCGTTTT CCCACGGATAACATAGTGAGAAAAAACAATTATTAAATTGAAGGCCAAGTCCTTAATTATTTTATGGTCAAAAAGTAAAT GCTGCAAATCCATGGTCTATAGTGTTGACAAAAGGGACCATGTTTTGGGGAAACAATAACGTGCTTGGACAGTAATTTCC AATGCATGCATAGCAAGCACACAATGTTCTTCATCTTCAATTTTTATAATAATAATACATGGGACCAGCATATAGCTAGA ATTTGATTAGGACACATTTGACATCTAAAATTGCACAAACTTTTTTTCATCCTCAATTGTTTTTTTGGTTGGGATAGTCA TTTTTTAAATTAAAATCAATTTAGGAAAATATTTTATGAGTAACTTCTAAGTAATTAATTCTGAAAAAAAAAGAAATTGA TTAAGAATGCATCAGCCTTCGAGGAATTAAAGGTAATTATTTTTTAAAAAAAAAGTAGTATACAAAGGTTCACTTTTTTT ATTCATTTTTTCTTGTTCCATCCTTTCTTTGCAGGTCCCTGAGTCTGTATTGGATAAGAGGTCAAGTGCATACAACAAAG GCAGGGTGTTCATTCATGGTGCTGATGAGAGCACAACAAGTGCATACAAAAAGCAATTCCAAACAGACTTGGCAAGCTTC CTGAGCTCAAGGTCAGTGGAGATGAAGAGAGGGGGGTCCATGTTCTTAGTTTGCTTGGGGAGAACCTCAGTGGACCCCAC AGACCAAGGTGGGGCTGGCCTTCTTTTTGGGACCCACTTTCAGGATGCTTGGGATGATCTTGTCCAAGAGGTAATTATCA TAATCCCAAACATTCCTATGCATGCTTGTGTGTATGAACAGCACTTCACATATAGACTATCTGCCAATTGGCAGACCAAA AGAAGGTGTTAACACTGTTGATATAAGGGTGGTGATACTGCATAAACATTCAATTTCTTTGAAATATCTTTTAAATATAT CATTTTATGACTTCTTAATCCCACAATATTTTGTAGCAGTTTTTTTAA
CDS sequence (LotjaGi1g1v0023500.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGAGACAATGTTGTTGTGTCCAAAATGGAACTTGAGAGGTTGCTTAGCATGAAAGGAGGCAAAGGAGAAGCCAGCTA TGCCAACAATTCCCAAGCTCAGGCCATACATGCCAAATCAATGCTTCACCTTCTGAAAGAAACCCTAGATAGAGTTAAGC TTGGAGATGCTGATACACCATTTGTGGTGGTGGACCTGGGTTGTTCATGCGGAAGCAACACCATCAAAGTGGTGGATGTG ATCATCAAGCACATCATCAAGCGCTATGAGTCTTTAGGGTGCTTTGACCTACCTGAGTTTTCTGCTTTCTTCTCTGACCT TCCCAGCAATGACTTCAACACTCTCTTTCAGCTCCTTCCTCCTCTTGCCAACTACGGTGTTAGCATGGAAGAGTGCCTCG CTGCCAACAACCACCGCTCCTACTTTGCTGCCGGAGTTCCTGGCTCTTTCTACCGGAGGCTTTTCCCGGCCAAGTCCATT GATGTTTTCCACTCAGCCTTTTCTTTGCACTGGCTATCTCAGGTCCCTGAGTCTGTATTGGATAAGAGGTCAAGTGCATA CAACAAAGGCAGGGTGTTCATTCATGGTGCTGATGAGAGCACAACAAGTGCATACAAAAAGCAATTCCAAACAGACTTGG CAAGCTTCCTGAGCTCAAGGTCAGTGGAGATGAAGAGAGGGGGGTCCATGTTCTTAGTTTGCTTGGGGAGAACCTCAGTG GACCCCACAGACCAAGGTGGGGCTGGCCTTCTTTTTGGGACCCACTTTCAGGATGCTTGGGATGATCTTGTCCAAGAGCA GTTTTTTTAA
Protein sequence (LotjaGi1g1v0023500.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGDNVVVSKMELERLLSMKGGKGEASYANNSQAQAIHAKSMLHLLKETLDRVKLGDADTPFVVVDLGCSCGSNTIKVVDV IIKHIIKRYESLGCFDLPEFSAFFSDLPSNDFNTLFQLLPPLANYGVSMEECLAANNHRSYFAAGVPGSFYRRLFPAKSI DVFHSAFSLHWLSQVPESVLDKRSSAYNKGRVFIHGADESTTSAYKKQFQTDLASFLSSRSVEMKRGGSMFLVCLGRTSV DPTDQGGAGLLFGTHFQDAWDDLVQEQFF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 8 | 267 | 260 | 2.7E-144 | – | |
| PANTHER | 8 | 267 | 260 | 2.7E-144 | ||
| SUPERFAMILY | 10 | 266 | 257 | 1.57E-80 | ||
| Gene3D | 35 | 266 | 232 | 7.1E-83 | – | |
| Pfam | 58 | 267 | 210 | 3.6E-73 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Methyltransferase activity | Catalysis of the transfer of a methyl group to an acceptor molecule. |
Expression pattern of LotjaGi1g1v0023500.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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