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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0023500 |
| Transcript ID | LotjaGi1g1v0023500.3 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Carboxyl methyltransferase; TAIR: AT5G55250.1 IAA carboxylmethyltransferase 1; Swiss-Prot: sp|Q9FLN8|IAMT1_ARATH Indole-3-acetate O-methyltransferase 1; TrEMBL-Plants: tr|I1N0J0|I1N0J0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0023500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:2838066..2842511) extracted from Lotus japonicus Gifu genome v1.2.
CTGGCTCCGATGGGAGACAATGTTGTTGTGTCCAAAATGGAACTTGAGAGGTTGCTTAGCATGAAAGGAGGCAAAGGAGA AGCCAGCTATGCCAACAATTCCCAAGCTCAGGTACATTTAATTCTCATATACATATACATGTATATGTAGCATCCCTCTT AAGTCTTAACAATTATCATCATGTTTTGGATATACGTTTAAAATTATCACTATCATCACTTTTCCTCCATCAAAAAACTT TCTAGCAAGAATTTGATCCTCCCTAAGATATAATTACGGAAAGATTTCTATCATTCAAAATATGTTAAAAAATATTGTGA ATGTTTGAGGTTTCTCTGAATCTTCGGTAAGAGAATCTAGACCAATTCCTAGTGATTCTTCTGAAACCACTTACTTTCTT TGACTTGAGAAATTAAAAGGTTTTCAAACACACAAAAAGTTATATATATATAGTTGTTACAATTTGCAAAACAAAATAAG TTTAATATTCTAATATGGAGTATCTTGCTTAACAAAAAGATTACAAATTTAATGACCCATGACTTCTCACATACATGCAG GCCATACATGCCAAATCAATGCTTCACCTTCTGAAAGAAACCCTAGATAGAGTTAAGCTTGGAGATGCTGATACACCATT TGTGGTGGTGGACCTGGGTTGTTCATGCGGAAGCAACACCATCAAAGTGGTGGATGTGATCATCAAGCACATCATCAAGC GCTATGAGTCTTTAGGGTGCTTTGACCTACCTGAGTTTTCTGCTTTCTTCTCTGACCTTCCCAGCAATGACTTCAACACT CTCTTTCAGCTCCTTCCTCCTCTTGCCAACTACGGTGTTAGCATGGAAGAGTGCCTCGCTGCCAACAACCACCGCTCCTA CTTTGCTGCCGGAGTTCCTGGCTCTTTCTACCGGAGGCTTTTCCCGGCCAAGTCCATTGATGTTTTCCACTCAGCCTTTT CTTTGCACTGGCTATCTCAGGTATACCTATACCTCTGTGTCTTGTTATTTTGTTCAAAGTATTGCTTACTTTTTTCTTTT CAACAAGGCTTCAGTACTAAATGTTATTGTTAGCAGTAAAATATCGTTTCCCAATTTTTATATTAATACATTAGTCACAA CTCTATTGAATCATATATGCTTATAAGGATACCAAAATTCTCAAATTTTTCATTGAAAGAATGCTCTTTCATTTTTTAAG AAAAGAAAAATAGTTAGATAGATATATATCTTCTTTTTTCCTAAGCAATTTTTGTTTTAACTTTACTTGCCAGCTCTGTT GGTTAAACTATTACACAATATTCTAATAATTTTGAATCATTCTATGACTTAAGCTTTCAGTTTTCAGTTTATCTTACTTT TGCCCGTGATCTTTATAGCGATCACCTTAATTCCTTGAAAATGTTTGAACTTTTAGTGAATTATCACAATTAATTTGATG AATATCTTTTAAGGGATTTCTCCTTAATTTGTATGACTTTCTTATATGCTTTTACTTTCAATTAACCAAACACTCGAAAG ATTCTATATGCATGCAGTCTCTGTTGTACATATGCTGTAGTTTCCACGACAAAATCTAAAAGGGACATTTTCGTTTTCCC ACGGATAACATAGTGAGAAAAAACAATTATTAAATTGAAGGCCAAGTCCTTAATTATTTTATGGTCAAAAAGTAAATGCT GCAAATCCATGGTCTATAGTGTTGACAAAAGGGACCATGTTTTGGGGAAACAATAACGTGCTTGGACAGTAATTTCCAAT GCATGCATAGCAAGCACACAATGTTCTTCATCTTCAATTTTTATAATAATAATACATGGGACCAGCATATAGCTAGAATT TGATTAGGACACATTTGACATCTAAAATTGCACAAACTTTTTTTCATCCTCAATTGTTTTTTTGGTTGGGATAGTCATTT TTTAAATTAAAATCAATTTAGGAAAATATTTTATGAGTAACTTCTAAGTAATTAATTCTGAAAAAAAAAGAAATTGATTA AGAATGCATCAGCCTTCGAGGAATTAAAGGTAATTATTTTTTAAAAAAAAAGTAGTATACAAAGGTTCACTTTTTTTATT CATTTTTTCTTGTTCCATCCTTTCTTTGCAGGTCCCTGAGTCTGTATTGGATAAGAGGTCAAGTGCATACAACAAAGGCA GGGTGTTCATTCATGGTGCTGATGAGAGCACAACAAGTGCATACAAAAAGCAATTCCAAACAGACTTGGCAAGCTTCCTG AGCTCAAGGTCAGTGGAGATGAAGAGAGGGGGGTCCATGTTCTTAGTTTGCTTGGGGAGAACCTCAGTGGACCCCACAGA CCAAGGTGGGGCTGGCCTTCTTTTTGGGACCCACTTTCAGGATGCTTGGGATGATCTTGTCCAAGAGGTAATTATCATAA TCCCAAACATTCCTATGCATGCTTGTGTGTATGAACAGCACTTCACATATAGACTATCTGCCAATTGGCAGACCAAAAGA AGGTGTTAACACTGTTGATATAAGGGTGGTGATACTGCATAAACATTCAATTTCTTTGAAATATCTTTTAAATATATCAT TTTATGACTTCTTAATCCCACAATATTTTGTAGCAGTTTTTTTAACCACTACAAAGCGGTATGTTCAAAGAATGTTTCAG AAAAGTTGATGAGTAATTCATAATAATAATGGTCTAGTGTTGTAGTCATCACCACCAGAAATACTTATCATGAACTCTCA CTGATCAAGTTTAAAGCAAAATCATTCTAGCCGTTAGTTAACAACACAAACTTGATCAAGTCATCCATTTATTAATCATC ATGTCGGCAGAAATAATAATTAGTTGCCGGATGGTAGTGTCATGTGGTCCGTAACATTGACCAGCAATTATGTTTTGGAT ATCTAGACTTTAGAGAAAACACAGAATCATACCATAATGGCTTAAAGCTGTACAAAAAAATGTGGTTGGTTCATATTCCC TCCGTTCCAGAAAGTTGGTTGTTTTGCACCATTTTTCATTATCCCAAAATCTTTGTTGTTTTAGAAAACCAATGCATTTT TTTGCTAATTTTTTCTACCTATACCCTCATTTAATCCATTTTCTCTCACTTATCACCTTTCATATTAACCAACCACAACT CTTCTCTATTAATTACATTTTTCTCTATCTAAGTATACTTTAGTAGTTACACATCATACTAGTAAAATTAAATAAGGGCA ATCTAGTCAAATTATACTATCAATAATTGTTTTCTTACTCTTTGTGCCACAACCTTAAATTACAAACTTTCTGGAACGGA GGGAGTATGATACTACTGGTTTTCTTAAATAAAATTTTGAGTTTGAGGTTTGTTAAAGGAAAAAATTATTCATTAGAAGA ACTAATTCTACTGAAATATAGATGTTTCTATCTCACTTTCGTAAAGTATACTTAAGGTGAAAAGAGAAAAATAAACTATA GACATAATAATTTTTGCATTCATCTGATCAAATTTAAATCTAATGATTGTAGTCTATGGGACCAAAGTACCAAACAATGT CTTGGAACAGAATCAATGGCATGTACTTACAAGAGTTATCCACTACCATGTTACACATCCAAACAATACTGTAATCAATG AAGTTCAGAGTATAACTCACCATATAATTAAGGATGTCCTCAGCTTTTAGTACAATCAATAACCAAAACATTTGTCCAAA CAAATCTCACTATATAATTTGAATACATCCTATATCTTCCATTTTTTGTCACATTTTTTTAATTAGAATGATAGATTTAC TTATTTATTTTCATTATTAATATTGTTACTCCTGTACAACAACTTGATTTAGATCACAGGCACATTGGGTGGCATGAGTA TTATGACTCTGTTTGCAACTTGTGTTCACAATGATCAATTGCTTCCTTCAAGCTCTTCTAACTATGCATAGTATAGTGTC TTTCTATTCATGAAATATAAAGCAAAGTATAAGTAAATGTTTAAAAATCCTTTTACACTTGATTCATAAAAGCCAAAATC AATTTAGGGGAAAAAATTGTGAGTAGCTTCTATATGTGGGAATTGATTTTGAGGAAAGAGAAACTAATCTAAACATGCTA TTGATGCAGGGATTAATTAGCCGTGAGAAACGAGACAATTTTAACATTCCGGTTTATGCGCCGAGCCTGCAAGACTTTAA GGAGGTGGTTGAAGCTGATGGTTCATTTGCCATAAACAAGCTTGAGGTGTTCAAAGGGGGGAGCCCCCTTGTGGTGAACC AACCTGATGATGCTAGTGAAGTAGGCAGGGCTCTAGCCAACAGCTGCAGGGCAGTGTGTGGTGTGCTTGTTGATGCTCAC ATTGGTGACAAGCACAGTGAGGAACTCTTTCTTAGAGTAGAGCAAAGAGCTACAAATCAAGCCAAAGAACTCTTAGAGAA ACTTCAGTTCTTTCACATAGTTGCATCCCTTTCTTTGGTTCAATGA
CDS sequence (LotjaGi1g1v0023500.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGAGACAATGTTGTTGTGTCCAAAATGGAACTTGAGAGGTTGCTTAGCATGAAAGGAGGCAAAGGAGAAGCCAGCTA TGCCAACAATTCCCAAGCTCAGGAAACCCTAGATAGAGTTAAGCTTGGAGATGCTGATACACCATTTGTGGTGGTGGACC TGGGTTGTTCATGCGGAAGCAACACCATCAAAGTGGTGGATGTGATCATCAAGCACATCATCAAGCGCTATGAGTCTTTA GGGTGCTTTGACCTACCTGAGTTTTCTGCTTTCTTCTCTGACCTTCCCAGCAATGACTTCAACACTCTCTTTCAGCTCCT TCCTCCTCTTGCCAACTACGGTGTTAGCATGGAAGAGTGCCTCGCTGCCAACAACCACCGCTCCTACTTTGCTGCCGGAG TTCCTGGCTCTTTCTACCGGAGGCTTTTCCCGGCCAAGTCCATTGATGTTTTCCACTCAGCCTTTTCTTTGCACTGGCTA TCTCAGGTCCCTGAGTCTGTATTGGATAAGAGGTCAAGTGCATACAACAAAGGCAGGGTGTTCATTCATGGTGCTGATGA GAGCACAACAAGTGCATACAAAAAGCAATTCCAAACAGACTTGGCAAGCTTCCTGAGCTCAAGGTCAGTGGAGATGAAGA GAGGGGGGTCCATGTTCTTAGTTTGCTTGGGGAGAACCTCAGTGGACCCCACAGACCAAGGTGGGGCTGGCCTTCTTTTT GGGACCCACTTTCAGGATGCTTGGGATGATCTTGTCCAAGAGGGATTAATTAGCCGTGAGAAACGAGACAATTTTAACAT TCCGGTTTATGCGCCGAGCCTGCAAGACTTTAAGGAGGTGGTTGAAGCTGATGGTTCATTTGCCATAAACAAGCTTGAGG TGTTCAAAGGGGGGAGCCCCCTTGTGGTGAACCAACCTGATGATGCTAGTGAAGTAGGCAGGGCTCTAGCCAACAGCTGC AGGGCAGTGTGTGGTGTGCTTGTTGATGCTCACATTGGTGACAAGCACAGTGAGGAACTCTTTCTTAGAGTAGAGCAAAG AGCTACAAATCAAGCCAAAGAACTCTTAGAGAAACTTCAGTTCTTTCACATAGTTGCATCCCTTTCTTTGGTTCAATGA
Protein sequence (LotjaGi1g1v0023500.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGDNVVVSKMELERLLSMKGGKGEASYANNSQAQETLDRVKLGDADTPFVVVDLGCSCGSNTIKVVDVIIKHIIKRYESL GCFDLPEFSAFFSDLPSNDFNTLFQLLPPLANYGVSMEECLAANNHRSYFAAGVPGSFYRRLFPAKSIDVFHSAFSLHWL SQVPESVLDKRSSAYNKGRVFIHGADESTTSAYKKQFQTDLASFLSSRSVEMKRGGSMFLVCLGRTSVDPTDQGGAGLLF GTHFQDAWDDLVQEGLISREKRDNFNIPVYAPSLQDFKEVVEADGSFAINKLEVFKGGSPLVVNQPDDASEVGRALANSC RAVCGVLVDAHIGDKHSEELFLRVEQRATNQAKELLEKLQFFHIVASLSLVQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 7 | 370 | 364 | 1.1E-193 | – | |
| PANTHER | 7 | 370 | 364 | 1.1E-193 | ||
| SUPERFAMILY | 10 | 369 | 360 | 7.14E-109 | ||
| Pfam | 46 | 369 | 324 | 2.3E-105 | ||
| Gene3D | 48 | 298 | 251 | 4.7E-113 | – | |
| Gene3D | 232 | 347 | 116 | 4.7E-113 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Methyltransferase activity | Catalysis of the transfer of a methyl group to an acceptor molecule. |
Expression pattern of LotjaGi1g1v0023500.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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