Transcript — View — Lotus Base

Overview

Field	Value
Gene ID	LotjaGi1g1v0023500
Transcript ID	LotjaGi1g1v0023500.4
Related isoforms 4	LotjaGi1g1v0023500.1 LotjaGi1g1v0023500.2 LotjaGi1g1v0023500.3 LotjaGi1g1v0023500.5
Lotus japonicus genome version	Gifu v1.2
Description	Carboxyl methyltransferase; TAIR: AT5G55250.1 IAA carboxylmethyltransferase 1; Swiss-Prot: sp\|Q9FLN8\|IAMT1_ARATH Indole-3-acetate O-methyltransferase 1; TrEMBL-Plants: tr\|I1N0J0\|I1N0J0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0023500
Working Lj name	n.a.

Genomic sequence (LjG1.1_chr1:2838066..2842511) extracted from Lotus japonicus Gifu genome v1.2.

CTGGCTCCGATGGGAGACAATGTTGTTGTGTCCAAAATGGAACTTGAGAGGTTGCTTAGCATGAAAGGAGGCAAAGGAGA AGCCAGCTATGCCAACAATTCCCAAGCTCAGGTACATTTAATTCTCATATACATATACATGTATATGTAGCATCCCTCTT AAGTCTTAACAATTATCATCATGTTTTGGATATACGTTTAAAATTATCACTATCATCACTTTTCCTCCATCAAAAAACTT TCTAGCAAGAATTTGATCCTCCCTAAGATATAATTACGGAAAGATTTCTATCATTCAAAATATGTTAAAAAATATTGTGA ATGTTTGAGGTTTCTCTGAATCTTCGGTAAGAGAATCTAGACCAATTCCTAGTGATTCTTCTGAAACCACTTACTTTCTT TGACTTGAGAAATTAAAAGGTTTTCAAACACACAAAAAGTTATATATATATAGTTGTTACAATTTGCAAAACAAAATAAG TTTAATATTCTAATATGGAGTATCTTGCTTAACAAAAAGATTACAAATTTAATGACCCATGACTTCTCACATACATGCAG GCCATACATGCCAAATCAATGCTTCACCTTCTGAAAGAAACCCTAGATAGAGTTAAGCTTGGAGATGCTGATACACCATT TGTGGTGGTGGACCTGGGTTGTTCATGCGGAAGCAACACCATCAAAGTGGTGGATGTGATCATCAAGCACATCATCAAGC GCTATGAGTCTTTAGGGTGCTTTGACCTACCTGAGTTTTCTGCTTTCTTCTCTGACCTTCCCAGCAATGACTTCAACACT CTCTTTCAGCTCCTTCCTCCTCTTGCCAACTACGGTGTTAGCATGGAAGAGTGCCTCGCTGCCAACAACCACCGCTCCTA CTTTGCTGCCGGAGTTCCTGGCTCTTTCTACCGGAGGCTTTTCCCGGCCAAGTCCATTGATGTTTTCCACTCAGCCTTTT CTTTGCACTGGCTATCTCAGGTATACCTATACCTCTGTGTCTTGTTATTTTGTTCAAAGTATTGCTTACTTTTTTCTTTT CAACAAGGCTTCAGTACTAAATGTTATTGTTAGCAGTAAAATATCGTTTCCCAATTTTTATATTAATACATTAGTCACAA CTCTATTGAATCATATATGCTTATAAGGATACCAAAATTCTCAAATTTTTCATTGAAAGAATGCTCTTTCATTTTTTAAG AAAAGAAAAATAGTTAGATAGATATATATCTTCTTTTTTCCTAAGCAATTTTTGTTTTAACTTTACTTGCCAGCTCTGTT GGTTAAACTATTACACAATATTCTAATAATTTTGAATCATTCTATGACTTAAGCTTTCAGTTTTCAGTTTATCTTACTTT TGCCCGTGATCTTTATAGCGATCACCTTAATTCCTTGAAAATGTTTGAACTTTTAGTGAATTATCACAATTAATTTGATG AATATCTTTTAAGGGATTTCTCCTTAATTTGTATGACTTTCTTATATGCTTTTACTTTCAATTAACCAAACACTCGAAAG ATTCTATATGCATGCAGTCTCTGTTGTACATATGCTGTAGTTTCCACGACAAAATCTAAAAGGGACATTTTCGTTTTCCC ACGGATAACATAGTGAGAAAAAACAATTATTAAATTGAAGGCCAAGTCCTTAATTATTTTATGGTCAAAAAGTAAATGCT GCAAATCCATGGTCTATAGTGTTGACAAAAGGGACCATGTTTTGGGGAAACAATAACGTGCTTGGACAGTAATTTCCAAT GCATGCATAGCAAGCACACAATGTTCTTCATCTTCAATTTTTATAATAATAATACATGGGACCAGCATATAGCTAGAATT TGATTAGGACACATTTGACATCTAAAATTGCACAAACTTTTTTTCATCCTCAATTGTTTTTTTGGTTGGGATAGTCATTT TTTAAATTAAAATCAATTTAGGAAAATATTTTATGAGTAACTTCTAAGTAATTAATTCTGAAAAAAAAAGAAATTGATTA AGAATGCATCAGCCTTCGAGGAATTAAAGGTAATTATTTTTTAAAAAAAAAGTAGTATACAAAGGTTCACTTTTTTTATT CATTTTTTCTTGTTCCATCCTTTCTTTGCAGGTCCCTGAGTCTGTATTGGATAAGAGGTCAAGTGCATACAACAAAGGCA GGGTGTTCATTCATGGTGCTGATGAGAGCACAACAAGTGCATACAAAAAGCAATTCCAAACAGACTTGGCAAGCTTCCTG AGCTCAAGGTCAGTGGAGATGAAGAGAGGGGGGTCCATGTTCTTAGTTTGCTTGGGGAGAACCTCAGTGGACCCCACAGA CCAAGGTGGGGCTGGCCTTCTTTTTGGGACCCACTTTCAGGATGCTTGGGATGATCTTGTCCAAGAGGTAATTATCATAA TCCCAAACATTCCTATGCATGCTTGTGTGTATGAACAGCACTTCACATATAGACTATCTGCCAATTGGCAGACCAAAAGA AGGTGTTAACACTGTTGATATAAGGGTGGTGATACTGCATAAACATTCAATTTCTTTGAAATATCTTTTAAATATATCAT TTTATGACTTCTTAATCCCACAATATTTTGTAGCAGTTTTTTTAACCACTACAAAGCGGTATGTTCAAAGAATGTTTCAG AAAAGTTGATGAGTAATTCATAATAATAATGGTCTAGTGTTGTAGTCATCACCACCAGAAATACTTATCATGAACTCTCA CTGATCAAGTTTAAAGCAAAATCATTCTAGCCGTTAGTTAACAACACAAACTTGATCAAGTCATCCATTTATTAATCATC ATGTCGGCAGAAATAATAATTAGTTGCCGGATGGTAGTGTCATGTGGTCCGTAACATTGACCAGCAATTATGTTTTGGAT ATCTAGACTTTAGAGAAAACACAGAATCATACCATAATGGCTTAAAGCTGTACAAAAAAATGTGGTTGGTTCATATTCCC TCCGTTCCAGAAAGTTGGTTGTTTTGCACCATTTTTCATTATCCCAAAATCTTTGTTGTTTTAGAAAACCAATGCATTTT TTTGCTAATTTTTTCTACCTATACCCTCATTTAATCCATTTTCTCTCACTTATCACCTTTCATATTAACCAACCACAACT CTTCTCTATTAATTACATTTTTCTCTATCTAAGTATACTTTAGTAGTTACACATCATACTAGTAAAATTAAATAAGGGCA ATCTAGTCAAATTATACTATCAATAATTGTTTTCTTACTCTTTGTGCCACAACCTTAAATTACAAACTTTCTGGAACGGA GGGAGTATGATACTACTGGTTTTCTTAAATAAAATTTTGAGTTTGAGGTTTGTTAAAGGAAAAAATTATTCATTAGAAGA ACTAATTCTACTGAAATATAGATGTTTCTATCTCACTTTCGTAAAGTATACTTAAGGTGAAAAGAGAAAAATAAACTATA GACATAATAATTTTTGCATTCATCTGATCAAATTTAAATCTAATGATTGTAGTCTATGGGACCAAAGTACCAAACAATGT CTTGGAACAGAATCAATGGCATGTACTTACAAGAGTTATCCACTACCATGTTACACATCCAAACAATACTGTAATCAATG AAGTTCAGAGTATAACTCACCATATAATTAAGGATGTCCTCAGCTTTTAGTACAATCAATAACCAAAACATTTGTCCAAA CAAATCTCACTATATAATTTGAATACATCCTATATCTTCCATTTTTTGTCACATTTTTTTAATTAGAATGATAGATTTAC TTATTTATTTTCATTATTAATATTGTTACTCCTGTACAACAACTTGATTTAGATCACAGGCACATTGGGTGGCATGAGTA TTATGACTCTGTTTGCAACTTGTGTTCACAATGATCAATTGCTTCCTTCAAGCTCTTCTAACTATGCATAGTATAGTGTC TTTCTATTCATGAAATATAAAGCAAAGTATAAGTAAATGTTTAAAAATCCTTTTACACTTGATTCATAAAAGCCAAAATC AATTTAGGGGAAAAAATTGTGAGTAGCTTCTATATGTGGGAATTGATTTTGAGGAAAGAGAAACTAATCTAAACATGCTA TTGATGCAGGGATTAATTAGCCGTGAGAAACGAGACAATTTTAACATTCCGGTTTATGCGCCGAGCCTGCAAGACTTTAA GGAGGTGGTTGAAGCTGATGGTTCATTTGCCATAAACAAGCTTGAGGTGTTCAAAGGGGGGAGCCCCCTTGTGGTGAACC AACCTGATGATGCTAGTGAAGTAGGCAGGGCTCTAGCCAACAGCTGCAGGGCAGTGTGTGGTGTGCTTGTTGATGCTCAC ATTGGTGACAAGCACAGTGAGGAACTCTTTCTTAGAGTAGAGCAAAGAGCTACAAATCAAGCCAAAGAACTCTTAGAGAA ACTTCAGTTCTTTCACATAGTTGCATCCCTTTCTTTGGTTCAATGA

Download Genomic Sequence

CDS sequence (LotjaGi1g1v0023500.4) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGGAGACAATGTTGTTGTGTCCAAAATGGAACTTGAGAGGTTGCTTAGCATGAAAGGAGGCAAAGGAGAAGCCAGCTA TGCCAACAATTCCCAAGCTCAGGAAACCCTAGATAGAGTTAAGCTTGGAGATGCTGATACACCATTTGTGGTGGTGGACC TGGGTTGTTCATGCGGAAGCAACACCATCAAAGTGGTGGATGTGATCATCAAGCACATCATCAAGCGCTATGAGTCTTTA GGGTGCTTTGACCTACCTGAGTTTTCTGCTTTCTTCTCTGACCTTCCCAGCAATGACTTCAACACTCTCTTTCAGCTCCT TCCTCCTCTTGCCAACTACGGTGTTAGCATGGAAGAGTGCCTCGCTGCCAACAACCACCGCTCCTACTTTGCTGCCGGAG TTCCTGGCTCTTTCTACCGGAGGCTTTTCCCGGCCAAGTCCATTGATGTTTTCCACTCAGCCTTTTCTTTGCACTGGCTA TCTCAGGTCCCTGAGTCTGTATTGGATAAGAGGTCAAGTGCATACAACAAAGGCAGGGTGTTCATTCATGGTGCTGATGA GAGCACAACAAGTGCATACAAAAAGCAATTCCAAACAGACTTGGCAAGCTTCCTGAGCTCAAGGTCAGTGGAGATGAAGA GAGGGGGGTCCATGTTCTTAGTTTGCTTGGGGAGAACCTCAGTGGACCCCACAGACCAAGGTGGGGCTGGCCTTCTTTTT GGGACCCACTTTCAGGATGCTTGGGATGATCTTGTCCAAGAGGAGGTGGTTGAAGCTGATGGTTCATTTGCCATAAACAA GCTTGAGGTGTTCAAAGGGGGGAGCCCCCTTGTGGTGAACCAACCTGATGATGCTAGTGAAGTAGGCAGGGCTCTAGCCA ACAGCTGCAGGGCAGTGTGTGGTGTGCTTGTTGATGCTCACATTGGTGACAAGCACAGTGAGGAACTCTTTCTTAGAGTA GAGCAAAGAGCTACAAATCAAGCCAAAGAACTCTTAGAGAAACTTCAGTTCTTTCACATAGTTGCATCCCTTTCTTTGGT TCAATGA

Download CDS Sequence

Protein sequence (LotjaGi1g1v0023500.4) extracted from Lotus japonicus Gifu v1.2 Proteins.

MGDNVVVSKMELERLLSMKGGKGEASYANNSQAQETLDRVKLGDADTPFVVVDLGCSCGSNTIKVVDVIIKHIIKRYESL GCFDLPEFSAFFSDLPSNDFNTLFQLLPPLANYGVSMEECLAANNHRSYFAAGVPGSFYRRLFPAKSIDVFHSAFSLHWL SQVPESVLDKRSSAYNKGRVFIHGADESTTSAYKKQFQTDLASFLSSRSVEMKRGGSMFLVCLGRTSVDPTDQGGAGLLF GTHFQDAWDDLVQEEVVEADGSFAINKLEVFKGGSPLVVNQPDDASEVGRALANSCRAVCGVLVDAHIGDKHSEELFLRV EQRATNQAKELLEKLQFFHIVASLSLVQ

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Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
PANTHER	PTHR31009 View details on PTHR31009 Search for proteins/transripts with this domain View external data on PTHR31009	7	257	251	2.7E-169	IPR005299 Show description in modal box View details on IPR005299 Search for proteins/transripts with this domain View on EBI InterPro Service
PANTHER	PTHR31009:SF42 View details on PTHR31009:SF42 Search for proteins/transripts with this domain View external data on PTHR31009:SF42	7	257	251	2.7E-169	–
SUPERFAMILY	SSF53335 View details on SSF53335 Search for proteins/transripts with this domain View external data on SSF53335	10	345	336	3.75E-93	IPR029063 Show description in modal box View details on IPR029063 Search for proteins/transripts with this domain View on EBI InterPro Service
Pfam	PF03492 View details on PF03492 Search for proteins/transripts with this domain View external data on PF03492	46	259	214	2.3E-74	IPR005299 Show description in modal box View details on IPR005299 Search for proteins/transripts with this domain View on EBI InterPro Service
Gene3D	G3DSA:3.40.50.150 View details on G3DSA:3.40.50.150 Search for proteins/transripts with this domain View external data on G3DSA:3.40.50.150	48	231	184	3.3E-80	–
Gene3D	G3DSA:1.10.1200.220 View details on G3DSA:1.10.1200.220 Search for proteins/transripts with this domain View external data on G3DSA:1.10.1200.220	232	256	25	3.3E-80	–
PANTHER	PTHR31009:SF42 View details on PTHR31009:SF42 Search for proteins/transripts with this domain View external data on PTHR31009:SF42	255	346	92	2.7E-169	–
PANTHER	PTHR31009 View details on PTHR31009 Search for proteins/transripts with this domain View external data on PTHR31009	255	346	92	2.7E-169	IPR005299 Show description in modal box View details on IPR005299 Search for proteins/transripts with this domain View on EBI InterPro Service
Gene3D	G3DSA:3.40.50.150 View details on G3DSA:3.40.50.150 Search for proteins/transripts with this domain View external data on G3DSA:3.40.50.150	257	274	18	3.6E-13	–
Gene3D	G3DSA:1.10.1200.220 View details on G3DSA:1.10.1200.220 Search for proteins/transripts with this domain View external data on G3DSA:1.10.1200.220	275	323	49	3.6E-13	–

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0008168 View details of GO:0008168 AmiGO InterPro QuickGO	Molecular function	Methyltransferase activity	Catalysis of the transfer of a methyl group to an acceptor molecule.	Subterm of View details of GO:0016741

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0023500.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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LotjaGi1g1v0023500.4