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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0028000 |
| Transcript ID | LotjaGi1g1v0028000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box/LRR-repeat protein, putative; TAIR: AT4G26980.1 RNI-like superfamily protein; Swiss-Prot: sp|Q9UKA2|FBXL4_HUMAN F-box/LRR-repeat protein 4; TrEMBL-Plants: tr|I1M6Q5|I1M6Q5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0028000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:3373458..3377609) extracted from Lotus japonicus Gifu genome v1.2.
AAAAAATTGTTGTTAAATAAAGTCGGCTTCGTTTATTTGAGAACATAATTCACAGTATTTCATGTTTTCTTCGTCTAATC TTAATTCCTCCGAAATCTGGGTCTTGTGTTGTGTTGTGTTGTGTTGTGTGTGTTACCGCAGTTTTCTGTTGTTGTTTTTC TTTTCATTTTGATTTTGATAATTGATGGATAAGGGAAAAGATGCAAAAGCATTATCAAGCTCTTTGCAGAACCTCGATTT GAATCCAGGATCCAACATCAACTCCAAGCCCTGTTCCTCCTCCGTTACCTTCACCAACACCCAGTTTTCCGGTAACCCCT CTGTCTCTCTTTCTCTCAACCTGGTTTTCACTCTGTTTTTTCAGGTGGGGTGTTATGTTTTCGTTTGGTTTTTGGTAGCT TTGAACTTTCAAAGGTTTATGATCAATTGCACTTGCTTTGTTTTCTGGGGTTCAATGGAAATTGATATACCGTTGATAAA CCAATGCAACTCTGGAATGCAGTGATTTTTTGTGTTTGTGATAATTTCAAATGGAAAAGATAAAAATATCAATAAAAAGT CTCATTTGTATCAACTTATCTGTCATCAAAATCAATTCTAATACCCAGAAGTTACTAACAGAAGTTTAGCTTCTCCCCAT AATGATTGGTTTTGATTTAGTCAATATAGTAGAAGTATTTCCAAACATGCACTTATTGTACTTGATTTTGTGTTTATTTT ATGGTAACTGCACATTGTTTAGTTTGGTTTTGACCTTAGACTTTGTGTTGTTTGTGTGACTAGCTTGTGCTAAAATTCAA GGAACCCCAGTTTGAGTTTTCACCTAATAGAATGAATAAGTTTTTGTTTTTCTGTGAAGGAGCCAATGTGTCTGTGTTAG TTGTTAGGGGTTTGGGTTGTTTACATGAGATCATAGGTTTAAACTCTTGGTGGCAATGTGCACTGATTCCCTCTTTTTTT CTGATGTATACACACAAAAATGGGATTATCTGATTGTTTGGGAATTTGTTCTTGCAGGATTACTACCTATAAAATCAAAG CCTCCAAGTTTAGTCAGCCTCTGCATTGGATTTATTGGCAGACATTTGGAGGATATTATTGCAGATTTGGCTGAGATTGC TGTCAACTTGCCACCTGATATCAAGGTATCTTGCTAGAGGATGATTCTATCTCGTCTAATCTTTTAATAGGTCATTTATC CTAATGCACATATCTTTTTTGAAAGACTGATGCACATATCTGTAAGTGAAGATTTGAAGTTATAGTGTGCACAATGCAAA TGACTGTGAAACAAACTTTCTCCAGGATATAGCCTGTTTCTTTTGCCAATGAAGTTATGCTTTGTTGAGGCGCCTATTTG GTGAACAAGGAGATTCTTAAGTGGTTGAAACTGTTGTTCTGCTTACTGTCATAAATACTTGTTGTGCATACTTACAGTTA AAGAATTAATGACAGATGGCGGTGGCAGCTATTGCTAGACGAAGAAAGTTGCTGAATGATGATGTCCTGATTGCATTAGC TGATACTTCCTGGGATATCCTTGACGTCTCTGGTTCAGATGTTTCTGATTTTGGCTTGATAAAAGTAGCTGAAGTATGTC GATCCGTTAAAGCTCTGGATATAAGGTATAGAATTATAAAAATTTAGTTTAAAAAGATTTGACAAAGCAATTGCTATGCC TTCATTCTTTTGTAAAATATCCTTGATGTCTAGAACATGGTAAGCTTTGTGCAATGGAACAGCTGGCATTCACGTTTCCA GCAAATATTTTGCTGCTTGAACAGTATCTTGAGTTTATTGATAGTGGATAATCAGGTCAGATTGGAGTTCTGCTTTAGGA CTTCCATTGTACTTCATGGTTTTGGTTTTATCAGACATTCAGGCTTGATGATTTTCAATTTTCTTCCCTCTGATTCTGTT CCATCAACATCTTACCTGGGGGTTAATACATTTGGATTCATGTCTAGCATGCTAATAAGCTCATTTATATTTTCTAGTGT GTGTTTTATATTATACTTCTTTTTCTTTCAGAATCTCTTGATATATTGAGACTATTTGCAGCCGGTGCACCAAAATTACT GCTACTGGCATATCTGAATTTGTGAATCGCTGCCATTTATTGGAGACATTGAGATGCGGGTACAGTTCTTCATTATCCGT TTTAAGTTTTATTTTTTATTTAATACTTTTTACCCATTTTGCCGCTTTAGATTATATTTGTTTGTCATTTAGTTCGTTAA AATTGAGAAATTGAAACTGCTTTAGTACCATGTTCACCTTGCAGTTGCATCTGTCACACTTTTGTAGGTAGGATAGGATA TGTAAATTGAGTTCACTTATAAAGATGATCAAAGCATATTTGCTTGCTCATTTATTTATAATTCCAAATTTTGGTTTTAT CACAATGGAAATGTTGTCCAAAACTTGGGAAGTTAATTCTAGATCTATATACAGTTGTTTTTAATTAAAAAGGTGGTAAT TGGTAAACTATGTATGTATGTAAAGCTTCACTCTTTTAAGGTTTTTCATTTTCTCCCTCATAAATCATAATGGCAGTTTC CTACTCTATCACATAGTGTCTCTTTTCATCCACTTAAATCACATTGTAAACAATAGTATGCTTAACTTAGGATTTTAAAC CTCATAACAGGCAATGAACCATAATTAATATTGCAGAGGGTGTCCAAGGAGTGACAAAACTGCTCGGAGATGCTTTAGTA TATTTAAACCAAGGCTAGAGTATGTGGAAGAGGATTCATGGGAGGAGCTTTATACGAAAGAAATTGCAAGTGGCGCACAA TCACTCAGATGGCTAGTATGGGTATGAACTTCAAACTCTGTCTCAATTATGGTAATTTCTAATTGAATGCACACTTTGGT CCTTTTTTAAATGCCACAAATTATGTATTCTTGCATATTCATATGTATTTTTCTTGGGGTAGAACACTACACTCCCTTCT CCCTGGAGAAGGATGAAGTGAGGCGTAGGAAAAAAAGAAGGGAAGGAATGAGGTTTAGGCAGGGTAATTTTATCAGCTAT ACATGAATAGTGGAGCTTGGCACAACTGTCAAAAGTTGTTGCCATGCGACTGAGGTCACGAGTTCAAGTTATGGAAATGA CCTCTTGTGTAAAAAACAAGTTAAGACTTCACACAATAGACCAAGTGGTTGGACCCTACCCCCGCGTTGCGGGAGCTTTT GTGCACCGGGTTGCCCTTTTATAGATGAATAGTTGGTTAACATCACTGATTACTTGACAATAGTCTGGTCCATAGTCTGT TTGGAATAATACCAATTAATGTTACTTCTCTGACAATTTCACTGGGGGAAGAAAAATGGGGATGAGATTTAACACTTGAG ATCACCAGCCAAAGTAAAAATGAGAAAATTCCCTTGTGGAATGGATCAGATTTTTTCTTTGATTCTTGTGAAATGTATAG AATAGGGTTTCTAATATCTTTTCTTCAGTGACATTTGTTCAAAGAAATGATCTGTGTTCATATAATCCTTTAATGTTTTC ATTTTGCAGCCAAACATTGATAAGAACTCGTTAGAGGACTTCTCCACTGAGTGCCCTCGTATTGTAGTGAATCCTAAGTC TCCCTTTGGGTTTAAGGGAACCCAGGTGCCTTGGGAAGCATTACCAAATATAACCCTGGATGATGGAGTTGTCAAGGATA TTGATCCCGGAACATGGACAAAGCATGGGATTGCTATGAGACCCATCATTCCACCATCATCTTCAAGTTCCACTGAATTA TCAATTGCTGAAAAATTCAGGCTCGCCTTTGTGGAGAGGGACAACCGGCTAGCTCCAAAGCGAGCGAAAAATGCTCGGCA ACATCAACGTCGCGCGGTGAGAGATCTGATGTTGATGAGCACAAGAGCTAAGGCAATGATCTTGGCATCACAAGCAAACA AGTCTCTTCATAGCAAAAACTCATAGAATTCTGAAATCACAGTGCACTTTTTCAGCTACCCTTACAATGTACTATTAACT TCTTTTGTATATATATATAACAAGTTTATTTTTTTTACTATAAACATGTTTGGAACGTATAGTCCACCTCCATTTTTCGG AGAACTTTATTAAATTTTCCCCAATCTTTTACTCTAAGGCATCTATACTCCTTAGGTATACATATTAGCTCT
CDS sequence (LotjaGi1g1v0028000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATAAGGGAAAAGATGCAAAAGCATTATCAAGCTCTTTGCAGAACCTCGATTTGAATCCAGGATCCAACATCAACTC CAAGCCCTGTTCCTCCTCCGTTACCTTCACCAACACCCAGTTTTCCGGATTACTACCTATAAAATCAAAGCCTCCAAGTT TAGTCAGCCTCTGCATTGGATTTATTGGCAGACATTTGGAGGATATTATTGCAGATTTGGCTGAGATTGCTGTCAACTTG CCACCTGATATCAAGATGGCGGTGGCAGCTATTGCTAGACGAAGAAAGTTGCTGAATGATGATGTCCTGATTGCATTAGC TGATACTTCCTGGGATATCCTTGACGTCTCTGGTTCAGATGTTTCTGATTTTGGCTTGATAAAAGTAGCTGAAGTATGTC GATCCGTTAAAGCTCTGGATATAAGCCGGTGCACCAAAATTACTGCTACTGGCATATCTGAATTTGTGAATCGCTGCCAT TTATTGGAGACATTGAGATGCGGAGGGTGTCCAAGGAGTGACAAAACTGCTCGGAGATGCTTTAGTATATTTAAACCAAG GCTAGAGTATGTGGAAGAGGATTCATGGGAGGAGCTTTATACGAAAGAAATTGCAAGTGGCGCACAATCACTCAGATGGC TAGTATGGCCAAACATTGATAAGAACTCGTTAGAGGACTTCTCCACTGAGTGCCCTCGTATTGTAGTGAATCCTAAGTCT CCCTTTGGGTTTAAGGGAACCCAGGTGCCTTGGGAAGCATTACCAAATATAACCCTGGATGATGGAGTTGTCAAGGATAT TGATCCCGGAACATGGACAAAGCATGGGATTGCTATGAGACCCATCATTCCACCATCATCTTCAAGTTCCACTGAATTAT CAATTGCTGAAAAATTCAGGCTCGCCTTTGTGGAGAGGGACAACCGGCTAGCTCCAAAGCGAGCGAAAAATGCTCGGCAA CATCAACGTCGCGCGGTGAGAGATCTGATGTTGATGAGCACAAGAGCTAAGGCAATGATCTTGGCATCACAAGCAAACAA GTCTCTTCATAGCAAAAACTCATAG
Protein sequence (LotjaGi1g1v0028000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDKGKDAKALSSSLQNLDLNPGSNINSKPCSSSVTFTNTQFSGLLPIKSKPPSLVSLCIGFIGRHLEDIIADLAEIAVNL PPDIKMAVAAIARRRKLLNDDVLIALADTSWDILDVSGSDVSDFGLIKVAEVCRSVKALDISRCTKITATGISEFVNRCH LLETLRCGGCPRSDKTARRCFSIFKPRLEYVEEDSWEELYTKEIASGAQSLRWLVWPNIDKNSLEDFSTECPRIVVNPKS PFGFKGTQVPWEALPNITLDDGVVKDIDPGTWTKHGIAMRPIIPPSSSSSTELSIAEKFRLAFVERDNRLAPKRAKNARQ HQRRAVRDLMLMSTRAKAMILASQANKSLHSKNS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 352 | 352 | 4.4E-157 | – | |
| PANTHER | 1 | 352 | 352 | 4.4E-157 | – | |
| Gene3D | 4 | 212 | 209 | 5.3E-14 | ||
| SUPERFAMILY | 113 | 196 | 84 | 2.75E-9 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0028000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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