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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0040200 |
| Transcript ID | LotjaGi1g1v0040200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | MADS-box transcription factor; TAIR: AT2G42830.1 K-box region and MADS-box transcription factor family protein; Swiss-Prot: sp|P29385|AGL5_ARATH Agamous-like MADS-box protein AGL5; TrEMBL-Plants: tr|A0A151RYP3|A0A151RYP3_CAJCA Agamous-like MADS-box protein AGL1; Found in the gene: LotjaGi1g1v0040200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:5579330..5585039) extracted from Lotus japonicus Gifu genome v1.2.
GGGAGAGAGAGAGTTTGGTTGTACGTAGTATATAGTTGGAGCTCTATATATTTTCACACCATAAATACCTTGTCTTATAG GCCAACCCACTCCCATATTCTGCAACCTTTTTGCACGATTCCACCAAATAACTAGAAACAAGCCCTATTATTGCAGATCG AGGTATAGCCAACAATGAGACCCTTTGTTTTATTCCTTTTTCCCTTCCCCATTACTGATCTTTCTAAATGTTTGAAAACT TGGTAGGTTTTTATGTTGGAGAGAGAAGTGATTCTGTAAGAAGCTACGCTAGGATTAGATTTTATGGTAGCAGAGAAGTA GTAAAAGTTAATCAAAACATGTTATATATCTAGCTATATCTATGTTCATGTTAGGCACACAATGACCATTTTATTCTAAA GTTTCTTAGGTTTTGTTTATCATGGAAATGATTCAAAGTAGTTTGGTGATTAATTTCAGCTTTCAGTTTAGTTTTCAGCT ATGGAGTTTCCAAATCAAGCATCAGAAGGATCATCTCAAACTAAGAAAAATGGAAGAGGGAAAATAGAGATCAAGCGGAT CGAAAACACAACGAACAGGCAAGTAACCTTCTGCAAGCGCCGCAACGGTTTGCTGAAGAAAGCCTATGAATTGTCAGTTC TTTGTGATGCCGAGGTTGCTCTAGTTGTCTTCTCAAACCGTGGCCGCCTCTATGAATATGCCAACAACAGGTTTACAGTT CAACCTCACTTCAAACATATTTATCTATATATGTGTTTTTCTTAAATAATGGCAAGTTGATGCTGAATTGGTTTGAATAA CATAGAGTGATATTTAGAAATGCCAGTTTTGTGAGGTTATATAAGACTTGGGTTACATTTTTCATTCATTCATAAGTTTC ATTTCAGCGTGTTTGGTTCTGCGAATGGTTTACTCATGATCACATTTATAAGCTAGAGCTATATATGAAATAAGCTTATA AGGCTAACATACTTAGTGCATGTGGATCAGCTTCTATTTTTTCAGAATTAATTTTGTGATTCATAAGCTTTGTATAAAAG TTTCTCCATGGAATTGATTTTGAGCTCAAAAAATTCTTTCCTTTTGGTTATTTTTGTTTGTTTTCCCCTTACTATATACA ATTCATGAGCTTTGTGGTGTTAATTTTATCATTCTTTGTCATGTACTTTTTGCAAGCTCTTTCATGATGGGTCTTCTCCA ATCTCCGGGATGGTATGTTTAAAGGGTTTGCAGATATGTGTAAGGGAAAGAAATAGACGTTATAAGATGCAATAATAAAA AGTAGCATGTAAATAGCAAGCTTCAATTAGGGTTACAAAGATTTGCAGGTGAGAGATCTTAGCTTCCTTGTGTATATTCA CACATGCTGCTGCTAAGCTTTAACTGCAGTCCATTTTTCTGCACAAAGCTGTCATGCACTCAATAACCCTCTTCTATTCT ATCTTGACTCTTACATAGTATTGTGTGGCACAGCACAAGCATCCAATTGGAAGTTAGGTTTCAGAAAACTTGTATACATA TTCTCATGGTTATTACACCATGTGTAAATTGACAAATTGTAATGGGCAAAAGCACACAACTAATAAGTGCATGTTTGAAT ACACGATGGAAAATCACAGTTGACAGTCACAAAAGCTAAGAAAAGTCGTTTTCATCTACCGTGATTTTATTTTATTGTAA TTTTTCACCGTGTATTCAAACATGCACGAAACTAATGATTTATGCTGGTACTTATGTTGATCAAGCCAAGCCAATGACCT TTTCAAATCTTGTGCCAGCTAATGATAGAGATCAGTTCAAAAGAAAAAATTTCTGTACATTATTTTTTCATGCATATTAA AGTTCATATATAACTAGATTTCATCATAGCTCTTTGACTCATAAGTTCAATGTTAAAGAATGGCGAAAGAATGATGATTT CATAGCTTAGAATCCCCCTCTGTAAAATGCATATATATATGCCGCTTGTGTCTGCAGTAAATTAATTTGTACATGATCCT TTTTACATTTTTTCTTAAAATAATTGATTGTATTGTTTGCAGTGTTAGAGGAACTATAGAAAGGTATAAGAAAGCATGTG CTGCTTCATCAAATACAGAATCTGTAGCTGAAGCTAATACACAGGTAAAAAAAATCAGATTAAAAATATATCAAAGATAT AAGTGGCAATTAAAGAATAATACGTATGCTCTAGCTAGTTTGGTTAATTATTTGAGCCAGAATAAATGTATATTGTTCTA CAAGTACAGTATCAGTATTTCAAGTTCAAGTTATTCTATTCTAAAAGCTACTGTAACCCCTTATAATATTAATAATTAGC TTACTTCTAAATGAAAATTAACCATTTTTATTCGTTATTATATTTAATGTTTCATTTTAATTTAATTGCATCAAACCATG ACAAGGTTCTCTGACTAAAACTAATATTACCAATATCAGTTTTATCAGCAGGAATCATCTAAATTAAAAAGACAGATCAG AGACATTCAGAATCTAAACAGGTCAGTTTCTTCTTTGGCTTAATTGCAGTTTTCGTCCCTGATGTTTACCTCTTGTGCAA TTTTGGCCCCCTTTGTTCTGATTGCGCGATTTAGATCATCTATGTTTCAAATAGTTAAAATTGGGCCCTCCGTTAGTCAA CCGTCTAATTGCTAACGACAATGCTATTTTCATCTCCTTCATTTACTATTTGCACCCCTCCTTCAGAGATAAAAAAAATA AAAAATTATTATTTCTATTTTATCATTAAATGTAAATCATAAATTTTTTATTTTACCCTCACCCCTTCATCTTCTTCCCC CTCTCTCTCACACTCAAAACTCCACCAACCACCCACCACCAACCCCACCCACAACCCCTTCTTCAACTTCACCTCCCCCA CCTTCTACCAGCCACCACCCCCACTCACCGCCACCACCCACCCCACCACCACGGCCCCCCACCCCCCCTTCATCTTCCCC AACGCACCCCACAGCTACCAGCAGCCACCCCACCTTCATCTTCCCCAATCCACCCCGCCACCCACAGCCACCAGCCGCCG CCACCCACCTTCATCTTCTCCAACCCAACCCACTCTACCCACCGCCCCCAACCCACTCACTCTTCTCACCCACCTTTTCA CCTTCTTTCAACCCAGAGATCAATTCAACCCTCCCACCTCTTCATCTTCGTTGCAACATCATCTCCCATCTTCAGAGATT GAATCTAAATCAGACCTTCTCTTCTTCGTTCCTCTGAAATCTTGGTGGTCATGGGTTTTCTCAATCTGGATTTTTTGGGT TCTAATCTAGGTTTTCTGGATTGGGGTTTTATGGGTTTTCTTTGTTTGATTTATTGATTTGTTCTGGATATATTGTTGTT GTTGTTTGCTTGTAGATGGGGATGAAGATCAAAGATGTTGGGGTTTTGGGTTTGCAATTTGTGGGTTGGGTTGGGGGGTT GTCGGTGGGGAGGAGAAGAAGAGTGGTGGTGGTGGTGGTTGGGTGGTGAGGAGAATGATGGTGGTGGTTGGGTGAGGAGG AGAAAAGAAGAAGATGATGAAGGTTGAGGAGAAGAGAAGAAGATGGACCTTCTGATTTCTTTTTATTTTTTATAATTTTT TAATTATGTGTGGATGGTGTAATTAGTAAAAATAGGGGTGAGAATAGTAGTCCCGTTAAAAATTGGACGGCAATGTGACG GAGGAGTCCAATTTTAACAATTTGAAACATAGATGATCTAAATCGCGCAATCAGAACAAAGGGGGCCAAAATTGCACAAG AGGTAAACATCAGGGACGAAAACTGCAATTAAGCCTTCTTCTTTTTATAAACCTTTTTCATAAACTTTCTTCATCAAATG AGTGAATGAATGTCTGTTTTTTTTATTTTGAGCTTGGGTATATATCCTCAAAATCATTGTTTTGTAAATTGAGTGCACTT AATATCATTAATGAATTTTGGTTTCCAGACACATCCTTGGTGAATCACTTAGCAGTTTGAGTCTAAAGGAACTAAAGAAC CTTGAGAGTAGATTGGAAAAAGGCCTAAGCAGAGTTAGATCTAGAAAGGTAAATATTTCTAAACTCAGCATGAATTTCTC TCCCCCTTACTTATACCATAAAAAAATGGAGGTATAGAGTTAATTTAAAAAGTTTAAGCATGGGAACATAAGTGATCTTT TTAATTACAAATGTACAAAAGTCAATCGAAAAAATATACAAGATAAGTTCTATTAGTATCCTGAATCAAATGGTTTACTT GGTACTTTGAAATATGCATTATATATTTCCCTTCCTAGTTAGAATATCTTTATTCCTTTAACTGACTTACACACTCCAAT TTTTCCAGCACGAAACTTTGTTTGGAGATATTGAGTTCATGCAAAAGCGGGTAATCATCATTATACTCTCTTCTATGCAG TAACAGAAATAGAAACATACTAAGACATGTATTGTTTTTGTCAATCTGCAGGAAATTGAGCTGCAAAACCATAATAATTT GTTACGAGCTAAGGTTCTTTCATTCTTTCCATAATTAACACACACACACACACACACACACTAAATATCCATGTATAAAA TAGGCTCAGAATTATCCCAGGTGGAAACTTCACATGATATTGTGATGTAAATTTATGAAAAGCGACATAGACACAACATG ATTAATGTAGTGGATGATGCAGATAGCTCAACATGAGAGAGCACAGCAACAAGAACAGAGTTTGCTACAGGGAAATCCAT GCGTGTCTATACCTTCACAATCATATGACCGGAATTTCTTCCCTGTGAATGTCCCCAATCATTAGTATTCGTCATGTCAA GACCAATCTGCTCTCCAACTTGTGTAAGCATATTAATCTTTCCATAATTAGGGTGTTTAGCTAATGAAAGCCATGTTGGA TACTTGTGAGCACTAATGCAAGCAAATATTAGCATTCACTTCGAGATAAGTTAACAAAACTGTTTTTTTGGATTGAGATA AAAGTCTATTACATTACACTCAACTAGTATCTAAACACACACTAAATCATTATAGAAAAGAATGGGGAAAGGAAAGGGTG GACTCAGGACTTCCTTACCTTTAATTTTTTGCTGTCATTTTCGCATACAATTCAATTTCAACATACTTATTAGGCCTTAT ATTAGTTCATGATTCTGCTTGATTAAATTCTTATGGCAACTATTTCTGATAATTTTCTCACTTCTTTTCTCACCATGGAA TGCAGATGATGATAAACTGGAAAGCCTCATGAAATTCTGCCACAATCTTCTCCATCTTATAATCTATCTGAATAGTTTCA AGTGGTGTCTATACTGGAGAGCCAGTACATGCCCAAAGTTTAAATGAGTGTCTTTAGAATTTCCTTTAGTAAAATTCTTC CAACTATGCACTAGTGAAAGAAACATTTGTACCAAATACAATATGTTTTATGTGTTTTTCAATATACTTTCTATCATATC CTAGCAATTATTTGTGTGTTTTGGTTTCACTACAAAATGCTTGTTTGGATATGAAACCGAGGAGTAGAATTAAAAAGGTT GAGGCATGACCCACTTACATGATTACACACATTCCCTTCCCTGACTAACTGCAAAATTACAAATGCCAAAAAATTGTTAT TTTTCAGTGTTTTCGAAGTGAACTCTAGAAGACAAGTTTAGAACATAAGACTCCATTTAAAACTCAGTCTATGTATTCGA AAAGTGAACATGAGTTCTCCTTTAATTGAG
CDS sequence (LotjaGi1g1v0040200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGTTTCCAAATCAAGCATCAGAAGGATCATCTCAAACTAAGAAAAATGGAAGAGGGAAAATAGAGATCAAGCGGAT CGAAAACACAACGAACAGGCAAGTAACCTTCTGCAAGCGCCGCAACGGTTTGCTGAAGAAAGCCTATGAATTGTCAGTTC TTTGTGATGCCGAGGTTGCTCTAGTTGTCTTCTCAAACCGTGGCCGCCTCTATGAATATGCCAACAACAGTGTTAGAGGA ACTATAGAAAGGTATAAGAAAGCATGTGCTGCTTCATCAAATACAGAATCTGTAGCTGAAGCTAATACACAGTTTTATCA GCAGGAATCATCTAAATTAAAAAGACAGATCAGAGACATTCAGAATCTAAACAGACACATCCTTGGTGAATCACTTAGCA GTTTGAGTCTAAAGGAACTAAAGAACCTTGAGAGTAGATTGGAAAAAGGCCTAAGCAGAGTTAGATCTAGAAAGCACGAA ACTTTGTTTGGAGATATTGAGTTCATGCAAAAGCGGGAAATTGAGCTGCAAAACCATAATAATTTGTTACGAGCTAAGAT AGCTCAACATGAGAGAGCACAGCAACAAGAACAGAGTTTGCTACAGGGAAATCCATGCGTGTCTATACCTTCACAATCAT ATGACCGGAATTTCTTCCCTGTGAATGTCCCCAATCATTAG
Protein sequence (LotjaGi1g1v0040200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEFPNQASEGSSQTKKNGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSNRGRLYEYANNSVRG TIERYKKACAASSNTESVAEANTQFYQQESSKLKRQIRDIQNLNRHILGESLSSLSLKELKNLESRLEKGLSRVRSRKHE TLFGDIEFMQKREIELQNHNNLLRAKIAQHERAQQQEQSLLQGNPCVSIPSQSYDRNFFPVNVPNH
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 22 | 22 | - | – | |
| MobiDBLite | 1 | 15 | 15 | - | – | |
| PANTHER | 13 | 200 | 188 | 4.2E-106 | – | |
| PANTHER | 13 | 200 | 188 | 4.2E-106 | – | |
| ProSiteProfiles | 17 | 77 | 61 | 33.039 | ||
| SMART | 17 | 76 | 60 | 1.3E-39 | ||
| CDD | 18 | 94 | 77 | 6.98468E-45 | ||
| SUPERFAMILY | 18 | 93 | 76 | 6.67E-33 | ||
| PRINTS | 19 | 39 | 21 | 7.1E-33 | ||
| ProSitePatterns | 19 | 73 | 55 | - | ||
| Pfam | 26 | 73 | 48 | 2.1E-26 | ||
| Gene3D | 29 | 127 | 99 | 2.9E-28 | ||
| PRINTS | 39 | 54 | 16 | 7.1E-33 | ||
| PRINTS | 54 | 75 | 22 | 7.1E-33 | ||
| Pfam | 101 | 187 | 87 | 5.2E-25 | ||
| ProSiteProfiles | 103 | 193 | 91 | 14.851 | ||
| Coils | 106 | 126 | 21 | - | – | |
| Coils | 137 | 157 | 21 | - | – | |
| Coils | 176 | 196 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | RNA polymerase II regulatory region sequence-specific DNA binding | Interacting selectively and non-covalently with a specific sequence of DNA that is part of a regulatory region that controls the transcription of a gene or cistron by RNA polymerase II. | ||
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Molecular function | DNA-binding transcription factor activity | A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons. | ||
| Cellular component | Nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
| Biological process | Positive regulation of transcription by RNA polymerase II | Any process that activates or increases the frequency, rate or extent of transcription from an RNA polymerase II promoter. | ||
| Molecular function | Protein dimerization activity | The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits. |
Expression pattern of LotjaGi1g1v0040200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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