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LotjaGi1g1v0051400.1

Overview

Field Value
Gene ID LotjaGi1g1v0051400
Transcript ID LotjaGi1g1v0051400.1
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description RNA binding protein; TAIR: AT5G12190.1 RNA-binding (RRM/RBD/RNP motifs) family protein; Swiss-Prot: sp|Q9FMP4|SF3B6_ARATH Splicing factor 3B subunit 6-like protein; TrEMBL-Plants: tr|I3SB95|I3SB95_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0051400
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:7280592..7286164) extracted from Lotus japonicus Gifu genome v1.2.

GCCCAACCCAACAGAAGTATTATATAAACATAAAATTATCAATTGAATAAGAATTCTTCTCTTTTCCTTCAACTTTCTGC GTTCGCAAATCCAAACACAACCGCGGCGGCGATGGCGACAATCAGCCTCCGGAAGGGAAACACACGGTTGCCACCGGAAG TCAACCGCGTCCTCTACGTCCGAAACCTCCCATTCAACATCACAAGCGAGGAGATGTACGATATCTTCGGCAAGTACGGC GCAATCCGCCAGATCCGAATCGGAACCACCAAGGACACGCGCGGCACCGCCTTCGTCGTGTATGAGGACATCTACGACGC CAAAACCGCCGTCGATCACCTCTCCGGCTTCAACGTCGCCAACCGCTACCTCATCGTGTTGTATTACCAGCAGGCGAAGA TGAGCAAGAAGTTTGACCAGAAGAAGAAGGAGGATGAGATCGCGAGGATGCAGGAGAAGTATGGCGTTTCCACCAAAGAC GTCAAGTAGATGTAAGACTCACTCTTCTTCCTCCTGAATTCGATAGGATCGTTGTGTTAGGGTTTTGTTATCGCTATGTA TATCTATATCTGTGTTTGATTTGATTGTGGAACTATGCTTATGTTGAACTGTGTAAACTATAATGATCAAAGCAATATCA TTATTATGGATGATTTTATCAATTTTCTGTTGTTCTATTGAATTGAATTTATGAAGATTCGATATCGTGCGTTGCTGGAT AGACATTGAAATTGATGTGTTTGTGGGTTAGGGTTTAGGGCACATGATAATTGTGAAGAGACGTTGAAATTTCTGATTTG TAGATAGTTATATTAGTAGGTGATGGTCATGGTTTGCCAACTGTATGTTGTCTATCATAAGAGTTCTCTTAACGAGTGCT AACGAGTATCCAAATATAGCCGAAGAAGTTACGTTGGAGCACAACCAAAGAGAGCATAGATGCATATCTGTATATGTATC ATTAGTCCTGTAAAAAATTAGTTTCTAATAGTAATAGCAAGTGTTTTGTTCTAGTGGAAAAAGCTTCTCTAGAGCGAGCG TGTCGGTAAAGTGAGAGAGTGAGGGTGTATCCACCTTAGGATTTTTTGTTACAAAATACTTTAACTTAGGTCAATGATTT AGTTTCAGGTTTTGTTCATCAAGGTAAAACTCCGCAATTTGAAGAAATTGGGTTGTGTGCATCTCTACTAATTTGTCAAT CCTCTATTAAACCAAAGCCTCTACACTTTTTTGGATTAAACCTCCTCAAAGAATAAAAGAAGGAGTGTGTACTCCCGTTG CTCTCATAATATGATGAGAATCAAGATTTGACAAAAAGTTTTAAAGCAAGTTTTTGGAGTTGCATGTATCCCTACTGTAT TGAATTGGATCCCAAACATCAGTAAAGTATTTTCTCTTAAAAAATATGGAGGATGCTTCTTAGATACATACGAGTATTGT ATGTGTATTTCTATCGCATAGGGAGACAAAAATCGATACTAGCAATTTTGAAGTTTCTGGATTTCATGGAATTGAATTGA CTAAATCTGTTTCTGTTTATCGGCTTCATAGGAGACTCATCATTTAGATTATAGGTTATTTTTTTGAAGGACCCAAACAT ACTTTACAAACTTGTGATAATTTGGAATGTGTAAGCATTGAATTCTACCGCGATTGTAGTTGTAAGTGTTAATTTCCTTT TAGAGTTTTAGTACTTCCTTTTGGAATGTGTAAGCCTGAGAAATTGTCACAGGTGACTACTTGACATTAAATATTGATAC AAAACTGAATTCAGTAGTGTCATCTAAGAGTAGAAAGTTCATATAATGTTTTAGTGCTTACTGTTAGCCAAACATCTAAG ACATACATGACTCTATTTTTCCTGCTGGTGTGATCTAAAGTGTATTCAAATATATTAATGGTGCACATACTATTAAACCT AGTTTGCAAGAGAGATAGTACATAAATAACACTCTTTTGATTTGATTTCTAAGTGAGCAGCAATTACAATATAAGGCTTA TTACAAGCTTTCACAGGAAAGAAAAGGAAAAGCAAAAAATAAAACCTGTCGAGCAAAATACCTAGTAGCATATCTTTACA TTTCTCGAAGGTTAGTTTTAAGTTTTTTTTTCCCTCTTGTGTTTGTTTCCACCTTGACCCATTTCTCACCTATATTCCCC CTCCCAACCAAGCAGCTATCATGCATGACAATCCTTGATCTTTCACTCATCAGTATCTGCACTGTTTAAAAACACACGTC TGAAAGAGAGACTATGATCCCTCTTAAAATATCTTTGCATGGTCCCTTCTAATACAAGGTTGAATCACGCCTCTTCTTAG TAAAAGCTTCTGGGTTTCCTTTACTCATCATCGCAGCAAACTCATCATAGTTAATCCGGCCATCCTGTAGAGACATGCAA GTTTCCTCATTATTTTTCAAAATCAACACTCAAATCTGCTGTACAGTATACTAACCATATGTGTAAGATTTTTTTTCATG TTAGAACTTCAACAATACATGTAAATGTAATTTATTCAGTTCAGGGCTTACGTTATCGGCATCAACTTCTGAAATGATTT CCTTGATGTCCCGGCCATCATGCATGTTGAACTCGTGGAGAGCTTGCTCTAGTTCTTCAATGGTAATGTACCTGATTCAT GGCAAAGCAGTGAAATTAGAACCTTCAACACCAATTAGTTTCAGGAGTGGCAAATATATGTTCAATCTAGTTGATTTTGT TTTATTTCTTTACCCGCTGTTATCTTTATCGAAGTATTGGAAAGCAGTATAAAGATGTTCTTCTTTGTTCATCCGGTTCA TGTGCATCGTTGCTGTGATGAACTCGTCGTAATCTATGGTTCCATTACCATCAGCATCTGCCTGCATTTTGCAGAAGAAT AAAGAAAAACCATCTTAGTAGTTTGTAGTGGAGAAGATACTTTTGAGCATGCAAAAATGAAGGAGAGAGAAACTTACAGC TTCCATTAATTGCTTAACTTCTTGCTCTGTCAGTTTTGTTCCTTGTTTTGCAAGTCCTTGCTTGAGCTCTTCTATTGTGA TGGTTCCACTGTTGTCCTCATCCATCCCCTTGAACATCTGCTTCAACCCCATAATTTCTTCCTCGGATAGGCAACCAGCA ATGACCTAACCATGTGTAAATTTAAACATACTGCTTAATTTATACAATTTCACTAAATGATTTATCCAAAATGAACAAAA GAAATTAAGTCAAAGTAGCATTACCCTTAGAGCAACTTTCTTGAATTGGTTCATTGCTTTGAACTGTTTGAGCCTATTCA GCACTGCATTGTCAAGTGGTTTATCTGGTGCTTCTCCATCCTCCTTGATCCATGGATGATCTATGTTTTTCATTAGAAAT GCTTTGTTATGATTCCATTGAACTCAAAAGATTCATTTGTATTTGTAATTAATGTAAAAGAAATTGAACTTAAGTTGTTC ATAGAAAGGAAGTCAATGAATATATATACTTAGAACTTCATGTGCTGTTAGCCTCTGCTTGGGATCTGAGTTCAACATTT TCCTCACAAGATCTTTTGCTGCAGGTGAAAGTGAGGGCCATGGATCGCTAGTGAAGTCAATGTGGCCTCGAAGGATAGCA TTGAATATTCCATTTTCAGATTCTGTCAAACCAAGCCTTGGTTTCAGTTTCAAGTTATGCAGATATTATGCAGATACACT AGATTCTAGAGGAATCCTTTTCTTGTTCTATTTAAGCTCTATAAACGATAGATAATTTAGAAATAGCTTTGAAGTTGAGT GAATGAATATGAACCTGCCCAAAATGGAGGAACACCAGACAGAAGAATGTATAACATAACACCAATGCTCCATATGTCTA CTTCTGGCCCATATTTCCTCTTCAAGACCTCAGGGGCAATGTAATATGCACTGCCAACAATATCTTTGAACACGTCTCCT GTAAAAAAGGTTAATCTTCGTGTTAAAATTTCATTTCAATTTGGAGTTCAATAATTATGTACCGACGATGTAATTTTTTT TATACTATCATCCAATCAGGATTCACTATTTGTCACATCAATTAATTAAATTAAGAAACTGCCAAAAAAAGAAACATATG ATTGGATGTTTGTGTAAGATTTTTTACGGTGTCAAGAAATGACCGCTATACATGACACAATCTTATCCATTTCCCTTGCT CAATTGTAAAACTCTAAAAAAACAAAGAAAATGTTCATGGCTTCTCCTTGATATCTTGTATGAAAACATGCTGAATTTCA TTGAAAAAGGAGAAAGAAAATAACAAATTAACCTGTCAATGATTTCATGCTAAACACATATTGCCTATGACTCTAAAATG GTAAATATGTAATGTTTTCCATGGAATTCTGATTATAATTATGATGTGAATTAATAGAGAGAAAACAGAAGAGAAAGGAC ATAATAAAAATTAGAAAACCTTGCTTGTAAAACACTGATAGGCCAAAATCTGTGGCCTTGAGGGGTGCATTCTCATCCTT GTTCAACAAGAGGAAATTCTCAGGCTTAAGATCCCTATGAATCACCCCCATGGAATGACAAGTGTGAACAATCTGAACAA TGGTTCTCAACAAGGAAGCTGCGGCGCGTTCAGTGTAATGGCCCTTGGCAATGATCCTATCAAAGAGCTCACCCCCTGCA CAAAGCTCCATGACCAGATGAACAGATTGCTTGTCCTCATAGGCACCAATGAGTTCCACAATGTTAGGCTGCCCTGTGAG ATGGTGCATGATCTGCACCTCCCTCCTCACATCCTCTATGTCCTCCTTGTTCACAAGCTTCCTTTTTGCTATTGTTTTGC AGGCAAATTGCTTCCCTGTGGCCTTGTGTGTGCACAAATGAGTCACACCAAATTGCCCTCTTCCAAGCTCCTTCCCCATG CTGTAGGTTGCTCTCACATCCTCCATTGGCCTTCCGAGAACCGGGCCAACCGCGGCAGGCTTGGAATTCTTGGAGGATGG AGGAGGAGATGGTTTTGTTGATGGTGGTGGGGTGGTGGCAGAGTGCTCTGTTCCTGCCCCTGCATTTGCATTGTTGTTGG TGGTGCTATTTTGGTTATTGGTTTCTCCCTTTTCCTCAGGGTCATTGGTACCACCTGAGCAACAGTTGCCCATGGTGGAA GGGAGAAATCAAAGCAGAAAAAGGAAAAAACTATGAAAAAGGAAGGAACTGAGAAGATGGAGAGAGATGGATTATAGGAA TGGTAAGGGTGGTGGAGAGAAAAGTATATCAGGGCATTGTGTTGTTTTTGTGTTTGGAGAGAAAAGTTCCATGCAGGGAA GAAAGAGGCATTGGGGAACAAAAAAAATATCTAAAAAAAAGTATTAAGGAAATTAAAGGGTGTTAAAAAGGACAGTTAAG TATTTACAGATTGGAATGATGAGGGAGGAAATTTAGAGGTAGGGATTGCCAGTGATAGAATTTAGGAATGATGGAAATTT TTGGGGGTGGCTTGTTGAGACAAGGGTGAGGAGGGATTTTCGGAGGAGGGAAAATAAAAATGGATTTTGGACAGTTACAA AGGTCAAAGGATCTTTGCTATAACATTCTACAAATGAGTTATGTAACTTAAAT
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0051400.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCGACAATCAGCCTCCGGAAGGGAAACACACGGTTGCCACCGGAAGTCAACCGCGTCCTCTACGTCCGAAACCTCCC ATTCAACATCACAAGCGAGGAGATGTACGATATCTTCGGCAAGTACGGCGCAATCCGCCAGATCCGAATCGGAACCACCA AGGACACGCGCGGCACCGCCTTCGTCGTGTATGAGGACATCTACGACGCCAAAACCGCCGTCGATCACCTCTCCGGCTTC AACGTCGCCAACCGCTACCTCATCGTGTTGTATTACCAGCAGGCGAAGATGAGCAAGAAGTTTGACCAGAAGAAGAAGGA GGATGAGATCGCGAGGATGCAGGAGAAGTATGGCGTTTCCACCAAAGACGTCAAGTAG
Download CDS Sequence

Protein sequence (LotjaGi1g1v0051400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MATISLRKGNTRLPPEVNRVLYVRNLPFNITSEEMYDIFGKYGAIRQIRIGTTKDTRGTAFVVYEDIYDAKTAVDHLSGF NVANRYLIVLYYQQAKMSKKFDQKKKEDEIARMQEKYGVSTKDVK
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR12785
6 123 118 2.7E-57 –
PANTHER
PTHR12785:SF7
6 123 118 2.7E-57 –
SUPERFAMILY
SSF54928
7 102 96 4.84E-24
IPR035979
Gene3D
G3DSA:3.30.70.330
15 120 106 1.1E-23
IPR012677
CDD
cd12241
17 93 77 1.0948E-53
IPR034150
ProSiteProfiles
PS50102
19 94 76 16.551
IPR000504
SMART
SM00360
20 90 71 9.8E-18
IPR000504
Pfam
PF00076
21 87 67 4.2E-18
IPR000504

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003676
Molecular function Nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0051400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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