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Field | Value |
---|---|
Gene ID | LotjaGi1g1v0051400 |
Transcript ID | LotjaGi1g1v0051400.2 |
Related isoforms 1 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | RNA binding protein; TAIR: AT5G12190.1 RNA-binding (RRM/RBD/RNP motifs) family protein; Swiss-Prot: sp|Q9FMP4|SF3B6_ARATH Splicing factor 3B subunit 6-like protein; TrEMBL-Plants: tr|I3SB95|I3SB95_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0051400 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:7285676..7286053) extracted from Lotus japonicus Gifu genome v1.2.
ATGGCGACAATCAGCCTCCGGAAGGGAAACACACGGTTGCCACCGGAAGTCAACCGCGTCCTCTACGTCCGAAACCTCCC ATTCAACATCACAAGCGAGGAGATGTACGATATCTTCGGCAAGTACGGCGCAATCCGCCAGATCCGAATCGGAACCACCA AGGACACGCGCGGCACCGCCTTCGTCGTGTATGAGGACATCTACGACGCCAAAACCGCCGTCGATCACCTCTCCGGCTTC AACGTCGCCAACCGCTACCTCATCGTGTTGTATTACCAGCAGGCGAAGATGAGCAAGAAGTTTGACCAGAAGAAGAAGGA GGATGAGATCGCGAGGATGCAGGAGAAGTATGGCGTTTCCACCAAAGACGTCAAGTAG
CDS sequence (LotjaGi1g1v0051400.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGACAATCAGCCTCCGGAAGGGAAACACACGGTTGCCACCGGAAGTCAACCGCGTCCTCTACGTCCGAAACCTCCC ATTCAACATCACAAGCGAGGAGATGTACGATATCTTCGGCAAGTACGGCGCAATCCGCCAGATCCGAATCGGAACCACCA AGGACACGCGCGGCACCGCCTTCGTCGTGTATGAGGACATCTACGACGCCAAAACCGCCGTCGATCACCTCTCCGGCTTC AACGTCGCCAACCGCTACCTCATCGTGTTGTATTACCAGCAGGCGAAGATGAGCAAGAAGTTTGACCAGAAGAAGAAGGA GGATGAGATCGCGAGGATGCAGGAGAAGTATGGCGTTTCCACCAAAGACGTCAAGTAG
Protein sequence (LotjaGi1g1v0051400.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MATISLRKGNTRLPPEVNRVLYVRNLPFNITSEEMYDIFGKYGAIRQIRIGTTKDTRGTAFVVYEDIYDAKTAVDHLSGF NVANRYLIVLYYQQAKMSKKFDQKKKEDEIARMQEKYGVSTKDVK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 6 | 123 | 118 | 2.7E-57 | – | |
PANTHER | 6 | 123 | 118 | 2.7E-57 | – | |
SUPERFAMILY | 7 | 102 | 96 | 4.84E-24 | ||
Gene3D | 15 | 120 | 106 | 1.1E-23 | ||
CDD | 17 | 93 | 77 | 1.0948E-53 | ||
ProSiteProfiles | 19 | 94 | 76 | 16.551 | ||
SMART | 20 | 90 | 71 | 9.8E-18 | ||
Pfam | 21 | 87 | 67 | 4.2E-18 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. |
Expression pattern of LotjaGi1g1v0051400.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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