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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0052700 |
| Transcript ID | LotjaGi1g1v0052700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Cyclin; TAIR: AT2G26760.1 Cyclin B1;4; Swiss-Prot: sp|O48790|CCB14_ARATH Cyclin-B1-4; TrEMBL-Plants: tr|G7KCT9|G7KCT9_MEDTR Carboxy-terminal domain cyclin; Found in the gene: LotjaGi1g1v0052700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:7439425..7443584) extracted from Lotus japonicus Gifu genome v1.2.
GGATGTATACCATTAAATTATTATTAGTTTAAAATTAAATTGATTAAAAATGAGATGATTAATTAGACGAAACATCATTT AATTAATCCACACTTGAGAAATTTTGTTTCTTTAATAAATTAAAAAATTATAAAAAATGATGGAAATAAAAAGGAGTAAA TTTTTATTGAGACCAATGTATCTTCCAGCACCAATATTGACTAATATATTTTACGCGAGTGCTCGTATAAAACGGTAAGT GACGAATCACATAATGTGATATATTTCTAAGGGTGAAAATCGAACAATAATTTAACCTCGCGGTTAAGAAAGTATTTGAG CAACTATTATATCGCACCTTGTGTTACACAGAGGAGTATATTGTGAGTTTTTTTTTTTTGTCTTAACCAAGGTATCCCCA CAGCCGATAACCGTGAGACTAATCCCTCGCCCCATGGTCAGCGCACTAAGCGGTAGAGGGCTGACCAAGGAGTTTTTTCT ATTCGCAAGAGTTGAGATTCGAACCCCCAACCACTTGCTTACAGTATATTATACTAATTAATTCAATTTTAGAATCGACC AAACAAACAATCAATATAAATATATATATATATATATTAAATAACATGAGAATATAAAAAAGGTAAGTGGAACTTTTTAT GAGTAAAAAATAAAGAAAAAAAAGAGGCACAACGTTTAGGTCATAGGAGCGGTTAAATTGAGAGAGAAGGGAATATTGAG TAGGACTTTGGACCAACGGCTAGAAAAAAGTTACAAGTAAAAGACTAGCTATTCATAGCCGTTGGATGATAGCACCACAG ATCCAACGGTCAAGATTCAAGAAAAAAATCGACCGTTGGAGCCTTATTATAAATCATTCCCAAACTCCCAAACGTTGCAG CATTCACCAAACAGTGTCAATTCTTCATTCATCATCATCATCATCATCATCACAGTCACAGAGAGAGAAGAAAGAGCGTG CGATTCGTGTTACGAGGTGGCTACCACCGTCGAGGAAGAAGGAGGAGGAGGAGAGACGCAGCAGCGGAACAGTCGTCTCA AGGTGTTTCTGTCGTCGCTGTTGTCGAGTATTGGCGGTGTTTTCACTTCCAGTTTTCAAGAATCGCCGATCGAAGAATCA ACCACCATGGCTTCTCGTGCAGCTGTTCTTCCCCGTGAACAACAACCCAGAGGTACTACCCTTTTCACTTCCAGTTTTCT CTGTTCTTTTCACTCCGATTTGAAACTTTGGGGGAAATAAGGGTTACGAAATTTGGGGTGGTTTTTTTCTTGCCCAGTTG ATTGTTTGATTAAAGAATGAAACTTTCTGTCGTTATTTGTAAAAGGGGTACCCAATTTTCGAATGATTCTTTGTTTTAAT TCTGATTTTTCTGATCAAATTTTCTTCTGCATCTTTTTGGGTGTGTTTTTTGTTTTGTTTTCTGATTTTGCTTTGTTTGT TGGTTTTAGTTGAGAATAAGCAAAAGATGGTAGCAGGAGAAGTGAGGAACAGAAGGGCACTCAAGGAGATTGGTAATCTT GTGGCTGATCCTGCTGCTAATGTGACTAAGCGCATCACAAGGAATGCAGCAGAGAAGAACAAGGTACAGTTTCTTTTTTC ATTGATTTTCTGTTTGGTATCTTGTTAGATTTTTCATTAAGTGATTTTATTTATTGATACTAGCATGATTGCTCTTCTTG TGTTGAATTCTGTGAAAATCATGAAACCAAAACTATTTTTCTAAATATTGTGGATGAGTGTCTGTTTGGTATCTTGTTAG GTTTTTCAATTTTCATTAAGTCTTTTTATTTGTTCATACTAGCATATTTGCTATTTTTGTGTTGGATTCTGTGAAAATCA TGAAACCAAAACTATTTTTCTAAATCTTGTGGATGGTTTATTTTTCAGAAGATAAGCACTGAGCTTGTGAATGCTGCACT AGTAGCAGCTAATGTTGGTGTTGGGAATGTTGTTGCTGCTTTTGCAACAAAGGTGGATCCAGCTCAGAGGCCACCAGAAC CTGAAGTTATAGTCATCAGCTCTGATGATGAATCTGAGGAAGAAAAGGAGGAACAACAAGCTGTTCAAGAAGGAAGAAAG ACAAGAGGAAAGTCTGCCAGCAAAAATGTCAAGGCCTTCAGTTCAGTCCTCACAGCTAGAAGCAAGGTAGTTAATTGTTT CCTTTCTTTTCTTATTTGATTATCTTCAATTTTGATCTAGTACAATGACTTCGATTTGTTGTTGTTGTTATTGTTGTTTA TGTGTGGTCTAACAATAAAATTTGTCAACCTCTCAGGCTGCTGCTGGACTTGCTTATAAGCTGAAGGATTTGGTAGTGAA CATTGATTCATCTGACATGGACAATGAATTGGCTGCAACTGAGTACATTGATGACATCTATAACTTCTACAAACTCACTG AGGTAGTGCTCCATGCTTTGTGTTCTTTCTTTATATCCCTACCTCCTTTTTCTTTTTTCTATGCACTTATTTCTCTAATG TATGCTTACAATTGGACTTTTGATGTCACAGGAAGATGGTCGTGTACATGATTACATGAGTTCACAGCCAGATATCAATG TCAAGATGAGGTCAATTCTTGTGGACTGGTTGGTGGAAGTGCATCGTAAATTCGAACTCATGCCAGAAACTTTCTATCTG ACCATAAACATTGTGGACCGGTTCCTGTCCATGAAGGCTGTGCACAGAAAGGAACTTCAGCTGGTTGGTATCAGCTCAAT GCTTATAGCCTCCAAATATGAAGAGATATGGGCACCAGAGGTGAAATTCTTAAGCTTTTTTGATAATGAAATGTGCCTTT GATAAAATAAATGTGCTAACTTTTTTGTATGTGTTTTCATGTATGCAGGTTAATGACTTTGTGTTGATATCAGACAATGC CTATGTTAGACAACAGGTTCTGGTCATGGAGAAAACAATCTTGAACAACCTTGAGTGGTATCTAACTGTTCCTACACCCT ATGTGTTCCTGGTTCGGTATATCAAAGCCTCTACTCCCTCTAGCAAAGAGGTATATTATTAGTTTAATTTTGAAATTTTT GTTGTGTTTTCAAGTGTTATGGTGTATGGAGTTCCCTTTTCTGATCAATTGGTGTGAAATTTGTGTCAATGTAGATGGAA AATATGGCGTTTTACCTTGCTGAACTTGGTATGATGCACTATCCTGTTGTGTCCTCGTACTCCCCTTCTGTGATTGCTGC TTCTGCTGTGTATGCTGCAAGATGCACGCTGCATAGGATCCCTTTCTGGACTGAAACCCTGAAGCACTATACAGGCTACT CTGAGGAACATCTAAGGTAATAATATATTTCTTGGGTTAGAAAATTGATGCAAGTAATGCAACTGATAGAATGTTTTGTT ACAAAATACAATGCTCAAGAATCAATTCTGTTTTGAAGCTTGCCTTGTATATGTTATGTGACTTGAATTATGTGCAAATT GTGAAACCATGTGATGATGCTATAAAAATGTTTTGTCTCAATTCATGACAATGAGGTACTAAAATTTTGTTTATTTATGA TGTGGCCAGGGAGTGTGCCAAACTCTTGGTGAACTTGCATACTGCTGCTCCAGAAAGTAAGCTGAGGGCAATTTACAAGA AATTCTGCAGCTCAGATCGTTGTGCAGTTGCTCTTCTTTATGTTCCAGCAAAAAACTTGTCAGCACAACAATCTTGAGAA CAAGTGCTAGCATAGGTTGTTTTTTAGGGTGATGATTGTATTGACCGGTATACAATGGTTGAAATTTAGCTATTATGACT TAAAACCTATGGTGGTTTTCATTTAGGGAGGAGATCATTGCTGTTATGATCCATATGGGCTTGAATTTTTCTTATTTTGA GTGTGATTGCTTGTGGCAGGCCTCAGCAGAGGTTGCTTCTTCTTGTAAAGCGAATTATCAATTGAATTGAGTCTTTTGTC AACTATTGCAGTTAGAGTTATGACAGTTTCATAGCTTATTGTGTTGACAAATCGCACTCTTCAATTAAAAAAAACTTAAT AATTCTAGTTTGAAATAAACCAGCTTGGGAATGCTATGGTTTGCTACCTAAGCTTGGGAATGCTATGGTTTGCTAATAAT AATTTGTTCAGAACAATTGCGAAAATAGCTTATTGTGTTGACAAATCGCACTCTTCAATTAAAAAAAACTTAATAATTCT
CDS sequence (LotjaGi1g1v0052700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTTCTCGTGCAGCTGTTCTTCCCCGTGAACAACAACCCAGAGTTGAGAATAAGCAAAAGATGGTAGCAGGAGAAGT GAGGAACAGAAGGGCACTCAAGGAGATTGGTAATCTTGTGGCTGATCCTGCTGCTAATGTGACTAAGCGCATCACAAGGA ATGCAGCAGAGAAGAACAAGAAGATAAGCACTGAGCTTGTGAATGCTGCACTAGTAGCAGCTAATGTTGGTGTTGGGAAT GTTGTTGCTGCTTTTGCAACAAAGGTGGATCCAGCTCAGAGGCCACCAGAACCTGAAGTTATAGTCATCAGCTCTGATGA TGAATCTGAGGAAGAAAAGGAGGAACAACAAGCTGTTCAAGAAGGAAGAAAGACAAGAGGAAAGTCTGCCAGCAAAAATG TCAAGGCCTTCAGTTCAGTCCTCACAGCTAGAAGCAAGGCTGCTGCTGGACTTGCTTATAAGCTGAAGGATTTGGTAGTG AACATTGATTCATCTGACATGGACAATGAATTGGCTGCAACTGAGTACATTGATGACATCTATAACTTCTACAAACTCAC TGAGGAAGATGGTCGTGTACATGATTACATGAGTTCACAGCCAGATATCAATGTCAAGATGAGGTCAATTCTTGTGGACT GGTTGGTGGAAGTGCATCGTAAATTCGAACTCATGCCAGAAACTTTCTATCTGACCATAAACATTGTGGACCGGTTCCTG TCCATGAAGGCTGTGCACAGAAAGGAACTTCAGCTGGTTGGTATCAGCTCAATGCTTATAGCCTCCAAATATGAAGAGAT ATGGGCACCAGAGGTTAATGACTTTGTGTTGATATCAGACAATGCCTATGTTAGACAACAGGTTCTGGTCATGGAGAAAA CAATCTTGAACAACCTTGAGTGGTATCTAACTGTTCCTACACCCTATGTGTTCCTGGTTCGGTATATCAAAGCCTCTACT CCCTCTAGCAAAGAGATGGAAAATATGGCGTTTTACCTTGCTGAACTTGGTATGATGCACTATCCTGTTGTGTCCTCGTA CTCCCCTTCTGTGATTGCTGCTTCTGCTGTGTATGCTGCAAGATGCACGCTGCATAGGATCCCTTTCTGGACTGAAACCC TGAAGCACTATACAGGCTACTCTGAGGAACATCTAAGGGAGTGTGCCAAACTCTTGGTGAACTTGCATACTGCTGCTCCA GAAAGTAAGCTGAGGGCAATTTACAAGAAATTCTGCAGCTCAGATCGTTGTGCAGTTGCTCTTCTTTATGTTCCAGCAAA AAACTTGTCAGCACAACAATCTTGA
Protein sequence (LotjaGi1g1v0052700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASRAAVLPREQQPRVENKQKMVAGEVRNRRALKEIGNLVADPAANVTKRITRNAAEKNKKISTELVNAALVAANVGVGN VVAAFATKVDPAQRPPEPEVIVISSDDESEEEKEEQQAVQEGRKTRGKSASKNVKAFSSVLTARSKAAAGLAYKLKDLVV NIDSSDMDNELAATEYIDDIYNFYKLTEEDGRVHDYMSSQPDINVKMRSILVDWLVEVHRKFELMPETFYLTINIVDRFL SMKAVHRKELQLVGISSMLIASKYEEIWAPEVNDFVLISDNAYVRQQVLVMEKTILNNLEWYLTVPTPYVFLVRYIKAST PSSKEMENMAFYLAELGMMHYPVVSSYSPSVIAASAVYAARCTLHRIPFWTETLKHYTGYSEEHLRECAKLLVNLHTAAP ESKLRAIYKKFCSSDRCAVALLYVPAKNLSAQQS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PIRSF | 1 | 434 | 434 | 3.9E-159 | – | |
| PANTHER | 17 | 426 | 410 | 1.4E-170 | – | |
| PANTHER | 17 | 426 | 410 | 1.4E-170 | ||
| MobiDBLite | 96 | 130 | 35 | - | – | |
| SUPERFAMILY | 168 | 303 | 136 | 2.46E-46 | ||
| Pfam | 179 | 303 | 125 | 1.5E-44 | ||
| Gene3D | 182 | 419 | 238 | 1.4E-93 | – | |
| Gene3D | 193 | 304 | 112 | 1.4E-93 | – | |
| CDD | 207 | 296 | 90 | 2.33838E-21 | ||
| ProSitePatterns | 208 | 239 | 32 | - | ||
| SMART | 213 | 297 | 85 | 4.0E-24 | ||
| CDD | 304 | 393 | 90 | 2.3525E-18 | ||
| Pfam | 306 | 421 | 116 | 1.4E-35 | ||
| SMART | 306 | 425 | 120 | 2.9E-36 | ||
| SUPERFAMILY | 307 | 425 | 119 | 7.94E-39 | ||
| SMART | 310 | 394 | 85 | 6.1E-23 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Host cell nucleus | A membrane-bounded organelle as it is found in the host cell in which chromosomes are housed and replicated. The host is defined as the larger of the organisms involved in a symbiotic interaction. |
Expression pattern of LotjaGi1g1v0052700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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